Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004746.1 Length=36596 Score E Sequences producing significant alignments: (Bits) Value seq114485 300 4e-77 seq57530 123 6e-24 seq219614 98.7 2e-16 >seq114485 Length=730 Score = 300 bits (332), Expect = 4e-77 Identities = 508/719 (71%), Gaps = 19/719 (3%) Strand=Plus/Plus Query 14938 GCTATCTTTGATGAAATAGGCGAAGTAAAAAGCCGTGAGAAGATTTCTAAGATTGTATCA 14997 ||||| ||||||||||| || ||||| ||||||| || ||||| || || || |||| Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62 Query 14998 GGGCAAGTTAAAGTTCCTAACCGTCAATTTGTTCAAATTTCAACAGCATATCCTGACCCT 15057 || ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| | || Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122 Query 15058 ACAGTTCCCTTTCATGAAGATGAGAAGATGCTGCAACAAGCAATGGAACAAGACTTTTTA 15117 ||||| || |||||||| |||||||| | || ||||| ||||| ||||| || | Sbjct 123 GGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGA--TTACA 180 Query 15118 A--GAGATGCTGATACTTATCTATGTTTAATTTGGAGTAATGACAGTTTAGATGAAACTT 15175 | |||| |||||||| || || | | |||||| | |||||| | |||| || | Sbjct 181 AGCGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGACGT 240 Query 15176 ATAAGCCAGAAACTTGGGTAAAATCAAATCCTTTATTAGATTTAGCT--TCAGAACATGA 15233 ||||| ||||||||||| || ||||| |||| || || || ||| || | || Sbjct 241 TCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCA-AAGA-GA 298 Query 15234 TAATCTCATGCAAGGACTACTTGATAAGCGTGATAACGATGTACTTACTGGTGCTGTTCA 15293 | |||||||| | | || |||||||||| || | || | | || Sbjct 299 AGTGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGG 358 Query 15294 TGACTTCCAATGTAAGAATCTTAACATGTGGCTTTCATCAGATAT-AGACAGTTATTTAA 15352 ||||| ||| ||||| || || ||||||| | || | || ||| ||||| || | Sbjct 359 AGACTTTCAAAACAAGAACCTGAATATGTGGC-TGCAAGAATCATCAGATAGTTACTTGA 417 Query 15353 ACCTAGCAGATGTTGAAAAAGCGATTGTTCCTGAATTTAATATCTATGGTCAACGCTG-T 15411 | ||||| || |||| || ||| ||||| ||| |||| |||||| | || | Sbjct 418 AACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTC-GTGATGTT 476 Query 15412 TATGTTGGTGTTGACTATTCTATG-TCATCAGATAATACAGCAGTTGCTTTTGTTTACCC 15470 ||| | ||| |||||||||| ||| ||| | ||||| || || |||||||||||| || Sbjct 477 TATATCGGTTTTGACTATTCGATGTTCAGC-GATAACACTGCGCTTGCTTTTGTTTTTCC 535 Query 15471 GTATGTAAGCGA-AGAAGGGCAGGCAAAATGGCATGTTGAACAACATTCGTTTATTCCTT 15529 |||| ||| | || ||| | | | ||| | ||| ||||||||||||||||||| Sbjct 536 ATATG-AAGATAGCGATGGGAA---ACACTGGTACATTGCTCAACATTCGTTTATTCCTT 591 Query 15530 TTCAAGCTGCAGGGTCAATTGAAGCCAAAGAAAAGCAAGATGGTATTAACTATAGAGAAC 15589 ||| || || |||||||||||||| ||||||||||| || ||| ||| |||| | Sbjct 592 GGCAAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGC 651 Query 15590 TTGAAACCAAAGGATTCTGTACAATCACAAGTCATCAACAAGGATTAATCAATGATGAT 15648 | | || |||| || || |||||||| || |||| ||||| | |||||||||||| Sbjct 652 TGGCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAATGATGAT 710 >seq57530 Length=397 Score = 123 bits (136), Expect = 6e-24 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 19264 CAACAGTTTATCCACTTTACTATGGAGATATGTCACAAGCTATTACATTGTTTGACCGTG 19323 || |||||||||| | || ||||| ||| | || || ||| ||| ||||||||||| Sbjct 320 CACCAGTTTATCCGTTATATTATGGCGATCTTTCTCAGGCTGCCACACTGTTTGACCGTC 261 Query 19324 AAAACATGTCATTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTACTA 19383 || | ||| || || || || |||||||||||||| ||||| |||| |||| Sbjct 260 AACAGATGAGCTTGGTTGTCACCAACATTGGTGCTGGTGCGTTTGAGCATGATCAGACTA 201 Query 19384 AAATTCGTGTAATCGATCGCTTCGATGTTAAAGCTACTGACTCAGAAGCTTTAGTTGCTG 19443 | | ||||| ||||| ||||||||||| |||| ||||| | || || || || |||| Sbjct 200 AGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGCTGATGCCTTTGTGGCTG 141 Query 19444 GTTCATTTACTGCAATTGCAGACCAAGTAGGTAACTTC 19481 | || || | |||||||| ||||| || |||||| Sbjct 140 GATCGTTCTCCGCAATTGCTGACCAGCAAGCAAACTTC 103 >seq219614 Length=1033 Score = 98.7 bits (108), Expect = 2e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 14548 TGGCAGAAGTTTATGCTATCTTTATTAATAGGTTGGAGAAATAAAGAAGGTGGTAAACGT 14607 |||||| ||||| | ||| | | ||||| ||| | ||| |||| ||||||||||| Sbjct 415 TGGCAGGCTTTTATATTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGG 356 Query 14608 TTCAGTCGTGCAATTATATCTGTAGGACGCGGTCAAGGGAAAACTTATATGTTAGCCATA 14667 || |||||||||||| | ||| | ||| |||||||| || || || ||| | | || Sbjct 355 TTTAGTCGTGCAATTGTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATC 296 Query 14668 TTAATGGCCTATTCATTTTTTGTAGAAAGTCGTGGTTTAAGTAACCAGGACTTTTTAGTT 14727 | | || |||| ||| || ||| | || || |||||| || || ||||| Sbjct 295 ATTGCGTGTTACTCATATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTA 236 Query 14728 TCATCCATTAATGCAAAACAAACAGGTAAATTATATGGCTATTTGAAATCGATGATTAA 14786 |||| |||||| || ||||| || ||| ||||||| || | ||| ||||| || Sbjct 235 GCATCGATTAATTACAAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAA 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116614365793488