Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq54724 107 2e-18
seq117562 98.7 8e-16
seq153189 96.9 3e-15
seq210337 86.0 5e-12
seq26661 84.2 2e-11
>seq54724
Length=7877
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
||||||| ||| | |||||||| || ||||||||||| || |||| ||| || |||||
Sbjct 2086 AACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCCGTCC 2027
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|| || || || || ||| | || | ||||||||| ||| || | || ||||||||
Sbjct 2026 TCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTCC 1967
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
|| || ||| || | | ||| || || ||| |||| ||||||||||
Sbjct 1966 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTT 1907
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || || |||||||| || |||||
Sbjct 1906 TTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875
>seq117562
Length=2070
Score = 98.7 bits (108), Expect = 8e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||| || || ||||||||||||| || | |||| || ||||| |||||
Sbjct 1427 GTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTTCCGTCTTCAAGCTGCTTACCG 1368
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | |||||||| ||||||||| || | || || ||||| || || |||
Sbjct 1367 GCGAAGATAAGTCTTTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCTTTG 1308
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | | |||||| || | || ||||| ||||||||| || || || |||||
Sbjct 1307 ACGTTATCAATAGTATC-TGAGCTTTCGACTTCGAGGGTAATGGTCTTTCCGGTCAAAGT 1249
Query 19024 TTTGACAAAAATTTGCAT 19041
||||| || ||||||||
Sbjct 1248 CTTGACGAAGATTTGCAT 1231
>seq153189
Length=17048
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888
|||||||| |||||| || |||||||||||||| ||||||||||| | ||| | ||
Sbjct 14721 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14662
Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||| ||||||||||| || | || || | |||||| ||| || | || || |||||
Sbjct 14661 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTC 14602
Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008
|| || || || | | | | || || |||| |||| |||||| ||
Sbjct 14601 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAGT 14542
Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || |||||||| || || |||||
Sbjct 14541 CTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509
Score = 86.0 bits (94), Expect = 5e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888
|||||||| |||||| || |||||||||||||| ||||||||||| | ||| | ||
Sbjct 14949 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14890
Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
||| ||||||||||| || | || || | |||||| |||
Sbjct 14889 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCC 14850
>seq210337
Length=1863
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || || || ||||||||||||||||||| || | ||||| |||||||||||
Sbjct 388 GTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTCAAGCTGTTTACCA 447
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | || |||||||| || ||| || | || |||||||| |||||| ||
Sbjct 448 GCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGAATTTTAGCCTTC 507
Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | | ||| || | || ||| || | |||||| || || ||||| |||||
Sbjct 508 ACATTATCAATAGTGTC-CGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGT 566
Query 19024 TTTGACAAAAATTTGCATT 19042
|| ||||| |||||||||
Sbjct 567 CTTCACAAAGATTTGCATT 585
>seq26661
Length=2801
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| || || | ||||| ||||| ||| | ||| || |||||||| || ||||||||||||
Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | || |||| || || || ||| | ||||| |||||||||||| ||
Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| || || ||||| || || || || | | ||| || || | |||
Sbjct 1052 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 993
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048
|||| ||| || || || || || | |||||| || || || ||||| | ||||
Sbjct 992 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAAT 939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413222602203832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |