Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq54724 107 2e-18 seq117562 98.7 8e-16 seq153189 96.9 3e-15 seq210337 86.0 5e-12 seq26661 84.2 2e-11 >seq54724 Length=7877 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | |||||||| || ||||||||||| || |||| ||| || ||||| Sbjct 2086 AACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCCGTCC 2027 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || || || || ||| | || | ||||||||| ||| || | || |||||||| Sbjct 2026 TCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTCC 1967 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || ||| || | | ||| || || ||| |||| |||||||||| Sbjct 1966 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTT 1907 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || |||||||| || ||||| Sbjct 1906 TTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 >seq117562 Length=2070 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||||||||||| || | |||| || ||||| ||||| Sbjct 1427 GTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTTCCGTCTTCAAGCTGCTTACCG 1368 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | |||||||| ||||||||| || | || || ||||| || || ||| Sbjct 1367 GCGAAGATAAGTCTTTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCTTTG 1308 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | |||||| || | || ||||| ||||||||| || || || ||||| Sbjct 1307 ACGTTATCAATAGTATC-TGAGCTTTCGACTTCGAGGGTAATGGTCTTTCCGGTCAAAGT 1249 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| || |||||||| Sbjct 1248 CTTGACGAAGATTTGCAT 1231 >seq153189 Length=17048 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 |||||||| |||||| || |||||||||||||| ||||||||||| | ||| | || Sbjct 14721 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14662 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| ||||||||||| || | || || | |||||| ||| || | || || ||||| Sbjct 14661 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTC 14602 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 || || || || | | | | || || |||| |||| |||||| || Sbjct 14601 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAGT 14542 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || |||||||| || || ||||| Sbjct 14541 CTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 |||||||| |||||| || |||||||||||||| ||||||||||| | ||| | || Sbjct 14949 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14890 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 ||| ||||||||||| || | || || | |||||| ||| Sbjct 14889 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCC 14850 >seq210337 Length=1863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || || ||||||||||||||||||| || | ||||| ||||||||||| Sbjct 388 GTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTCAAGCTGTTTACCA 447 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||||||| || ||| || | || |||||||| |||||| || Sbjct 448 GCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGAATTTTAGCCTTC 507 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||| || | || ||| || | |||||| || || ||||| ||||| Sbjct 508 ACATTATCAATAGTGTC-CGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGT 566 Query 19024 TTTGACAAAAATTTGCATT 19042 || ||||| ||||||||| Sbjct 567 CTTCACAAAGATTTGCATT 585 >seq26661 Length=2801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||||| ||||| ||| | ||| || |||||||| || |||||||||||| Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || |||| || || || ||| | ||||| |||||||||||| || Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| || || || || | | ||| || || | ||| Sbjct 1052 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 993 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 |||| ||| || || || || || | |||||| || || || ||||| | |||| Sbjct 992 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAAT 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413222602203832