Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq26767 170 2e-37 seq249645 120 3e-22 seq244327 89.7 5e-13 >seq26767 Length=1149 Score = 170 bits (188), Expect = 2e-37 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 142219 TTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 142278 ||||| || | ||| | |||||||| | |||||||| | || | ||| || ||||| Sbjct 79 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 138 Query 142279 ATTGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142338 ||||||||| | || || || ||||| | || || ||||||||||| |||||||| Sbjct 139 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 198 Query 142339 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCG 142398 ||| |||| |||||||| | || |||||| ||| ||||| |||| || | | Sbjct 199 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 258 Query 142399 ATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAA 142458 || | |||| ||||||||| | ||| | || ||||| || || ||||||| |||| Sbjct 259 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 318 Query 142459 ATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142518 | ||||| | ||| || | ||| ||||||||| | || |||| | |||| Sbjct 319 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 378 Query 142519 ATAACTACAC---AACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGG 142575 || | |||| | ||| || || ||||| ||||| | | | || | ||||||||| Sbjct 379 ATTAAAACACATGAGCTA---AATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGT 435 Query 142576 GTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACG 142619 || || || |||| || ||| |||| ||||| ||||||||| Sbjct 436 GTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 120 bits (132), Expect = 3e-22 Identities = 301/450 (67%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 142195 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAAT 142254 |||||||||||||| || | |||||| || || || || ||||||||| || || | | Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885 Query 142255 AGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATA 142314 | ||| |||||||| ||||| | ||| || || || |||||||| ||||| | Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825 Query 142315 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142374 |||||||| || || |||| || || |||||||| ||| | || |||||| || Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765 Query 142375 GTATGTCGAACTTCACCCATACCGATCTTAGAACCTTCTGCACGAAGCATACCAACGTTG 142434 ||||| | ||||||| || ||| ||| ||||| | ||| ||||| Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTG 264705 Query 142435 ATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTAAT 142493 || ||||||||||| || | || | ||| | | || ||| | || ||| || Sbjct 264704 ATGCCGATACCAGCACGCTGTGACACATAGCGTACGA-TGGCGCTAGTGGTGGCGTTGAT 264646 Query 142494 AGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAG-AGAACTGGCGAGTTGGAG 142552 ||| | ||| |||||| ||| || | || | || || ||||| || | ||| | Sbjct 264645 AGAGTCTAAGCTATCACCACATTCGATTAAGACGC-ACGAGCTAAACTGACGCGATGGCG 264587 Query 142553 TACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATGAGT--AGAAACGGCATC 142610 |||| |||||| ||| ||||| ||||| | ||| | || ||| | || ||||| Sbjct 264586 TACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT--TGAATTCTGAGGTCGCATC 264529 Query 142611 ATAAAAACGAATAATATGTTTCAAACGGTC 142640 ||| || || | | || | ||||||||| Sbjct 264528 ATAGAAGCGTTTGACATAATGCAAACGGTC 264499 >seq244327 Length=1302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 140456 AATCTCATCAAATACTTTGGATGGATCGGTATAAAGATTTCGCATAATATGAGTATATGA 140515 ||| |||||||||| | |||||| || || ||||| |||||||||||||| || Sbjct 803 AATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGAGTATAAGA 862 Query 140516 ACGAGAGTGAATAGTTTCACTGAATGTCCATGTTGCAACCCACGTATCTAATGAAGGGTC 140575 ||| |||||||||||||| || | ||||||| ||| ||| || |||||| || Sbjct 863 ACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAATTCCGGAAT 922 Query 140576 GGAAATCAGTGCCATAAGTACCGCAGATGGGGC-CCTGCCTTGGATAGAATCCAATAATG 140634 ||||| | || | || | | | | || | || ||||| ||||| || ||||||| Sbjct 923 AGAAATAATTGGTAGAA-AAGCAATGTTAGGACTTCTTCCTTGAATAGAGTCTAATAATG 981 Query 140635 ATTGATACTTAAGATT 140650 |||||| || | ||| Sbjct 982 TTTGATATTTTAAATT 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534273358617600