Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_004928.1
Length=167560
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 170 2e-37
seq249645 120 3e-22
seq244327 89.7 5e-13
>seq26767
Length=1149
Score = 170 bits (188), Expect = 2e-37
Identities = 281/404 (70%), Gaps = 6/404 (1%)
Strand=Plus/Plus
Query 142219 TTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 142278
||||| || | ||| | |||||||| | |||||||| | || | ||| || |||||
Sbjct 79 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 138
Query 142279 ATTGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142338
||||||||| | || || || ||||| | || || ||||||||||| ||||||||
Sbjct 139 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 198
Query 142339 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCG 142398
||| |||| |||||||| | || |||||| ||| ||||| |||| || | |
Sbjct 199 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 258
Query 142399 ATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAA 142458
|| | |||| ||||||||| | ||| | || ||||| || || ||||||| ||||
Sbjct 259 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 318
Query 142459 ATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142518
| ||||| | ||| || | ||| ||||||||| | || |||| | ||||
Sbjct 319 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 378
Query 142519 ATAACTACAC---AACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGG 142575
|| | |||| | ||| || || ||||| ||||| | | | || | |||||||||
Sbjct 379 ATTAAAACACATGAGCTA---AATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGT 435
Query 142576 GTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACG 142619
|| || || |||| || ||| |||| ||||| |||||||||
Sbjct 436 GTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 120 bits (132), Expect = 3e-22
Identities = 301/450 (67%), Gaps = 8/450 (2%)
Strand=Plus/Minus
Query 142195 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAAT 142254
|||||||||||||| || | |||||| || || || || ||||||||| || || | |
Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885
Query 142255 AGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATA 142314
| ||| |||||||| ||||| | ||| || || || |||||||| ||||| |
Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825
Query 142315 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142374
|||||||| || || |||| || || |||||||| ||| | || |||||| ||
Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765
Query 142375 GTATGTCGAACTTCACCCATACCGATCTTAGAACCTTCTGCACGAAGCATACCAACGTTG 142434
||||| | ||||||| || ||| ||| ||||| | ||| |||||
Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTG 264705
Query 142435 ATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTAAT 142493
|| ||||||||||| || | || | ||| | | || ||| | || ||| ||
Sbjct 264704 ATGCCGATACCAGCACGCTGTGACACATAGCGTACGA-TGGCGCTAGTGGTGGCGTTGAT 264646
Query 142494 AGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAG-AGAACTGGCGAGTTGGAG 142552
||| | ||| |||||| ||| || | || | || || ||||| || | ||| |
Sbjct 264645 AGAGTCTAAGCTATCACCACATTCGATTAAGACGC-ACGAGCTAAACTGACGCGATGGCG 264587
Query 142553 TACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATGAGT--AGAAACGGCATC 142610
|||| |||||| ||| ||||| ||||| | ||| | || ||| | || |||||
Sbjct 264586 TACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT--TGAATTCTGAGGTCGCATC 264529
Query 142611 ATAAAAACGAATAATATGTTTCAAACGGTC 142640
||| || || | | || | |||||||||
Sbjct 264528 ATAGAAGCGTTTGACATAATGCAAACGGTC 264499
>seq244327
Length=1302
Score = 89.7 bits (98), Expect = 5e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 140456 AATCTCATCAAATACTTTGGATGGATCGGTATAAAGATTTCGCATAATATGAGTATATGA 140515
||| |||||||||| | |||||| || || ||||| |||||||||||||| ||
Sbjct 803 AATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGAGTATAAGA 862
Query 140516 ACGAGAGTGAATAGTTTCACTGAATGTCCATGTTGCAACCCACGTATCTAATGAAGGGTC 140575
||| |||||||||||||| || | ||||||| ||| ||| || |||||| ||
Sbjct 863 ACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAATTCCGGAAT 922
Query 140576 GGAAATCAGTGCCATAAGTACCGCAGATGGGGC-CCTGCCTTGGATAGAATCCAATAATG 140634
||||| | || | || | | | | || | || ||||| ||||| || |||||||
Sbjct 923 AGAAATAATTGGTAGAA-AAGCAATGTTAGGACTTCTTCCTTGAATAGAGTCTAATAATG 981
Query 140635 ATTGATACTTAAGATT 140650
|||||| || | |||
Sbjct 982 TTTGATATTTTAAATT 997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534273358617600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |