Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq78792 100 2e-16 seq153189 82.4 5e-11 >seq78792 Length=14290 Score = 100 bits (110), Expect = 2e-16 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| |||| || ||||| | ||||| || || || || |||||||| | Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | ||| |||||||| ||||| ||| || |||||||||||||||| || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| | ||| || | | || ||||| | || ||| Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 11490 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGTTAAT 33382 || || ||||| || || ||||| || ||||| ||||| || ||||| | | || || | Sbjct 11489 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTCTCTGTTTTTT 11430 Query 33383 GTTCG 33387 | ||| Sbjct 11429 GCTCG 11425 >seq153189 Length=17048 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | |||||||| || || || ||||| || | ||| || || Sbjct 14495 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGTCCA 14436 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||||||||| || || || | ||||| |||| || || ||||| || Sbjct 14435 TCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTG 14376 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | |||||||| | || || || || || || Sbjct 14375 TCCTGGATCTTGGCTTTAACATTGTCGATCGTGTCCGAGCTTTCCACCTCGAGGGTGATT 14316 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || ||||| || ||||| Sbjct 14315 GTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317739391962744