Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq26767 158 1e-33 seq249645 132 5e-26 >seq26767 Length=1149 Score = 158 bits (174), Expect = 1e-33 Identities = 304/446 (68%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 ||||| |||||||| ||||| | ||||||| ||||| | | || ||||| | || Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 135845 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135904 | |||| || ||||| || | | |||||||| || |||||||| ||||| ||| | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 135905 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135964 ||| ||||| || || | || || ||||| || || || || || ||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 135965 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 136024 ||| | || || ||| ||||||||| |||| |||| | || | ||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 136025 CGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGAT 136084 || ||||| | ||||| || ||||| || || || || | || ||| || | || Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 136085 TGCATTTGCTGTTTCGTTGATGCCCTGCA-ATGAGTCATCACTTTCAATCACCACGCACG 136143 | | | | || |||| || | | || | ||||||| |||||| | || || | Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTA-TCATCACATTCAATTAAAACACATG 391 Query 136144 AACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATTT 136203 | ||||||||||| || ||||| | || || | |||||| || || || | ||| |||| Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451 Query 136204 GCTTATTCGCAACAGCATTATAAAAA 136229 | | | || |||||||||||| Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAA 477 >seq249645 Length=476466 Score = 132 bits (146), Expect = 5e-26 Identities = 284/417 (68%), Gaps = 17/417 (4%) Strand=Plus/Minus Query 135795 TTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCC---TTATTG 135851 |||| |||||||||||| || | |||||| | ||||| ||||| || || ||||| Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897 Query 135852 TTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGC 135910 || || || ||| |||| ||| ||||||||||| | |||||| | | ||||| Sbjct 264896 TTGAGTACCAGTAAT--GACT--CAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGC 264841 Query 135911 CGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCA 135970 || |||||||| | || ||||||||||| | |||||||| || || || ||| | Sbjct 264840 AGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATA 264781 Query 135971 GAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCC----G 136026 || || ||| ||||||||| | ||||||| | || ||| || || | Sbjct 264780 AAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGA---TAG-GGCTACCAAGGG 264725 Query 136027 CGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGATTG 136086 | || || ||| |||||||| ||||| |||||||||| | ||| | ||| | Sbjct 264724 CACGGATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGG 264665 Query 136087 CATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCACGAAC 136146 | | | || ||||||| | || ||| ||| ||| || | |||||||| | Sbjct 264664 CGCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGC 264605 Query 136147 TAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATTT 136203 |||| || || | ||| ||||||||||| | ||| || || || || || ||||||| Sbjct 264604 TAAACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT 264548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522976819480640