Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq54724 93.3 3e-14 seq50902 87.8 1e-12 seq204555 86.0 4e-12 seq117562 84.2 2e-11 >seq54724 Length=7877 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATC 43968 |||||||| || || || |||||| |||||||| || ||| | | | || | || Sbjct 2086 AACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGC-CGTC 2028 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | ||| ||||| ||||| ||||| | ||||||||| |||| | ||||||||| || Sbjct 2027 CTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTC 1968 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 || || ||| || | | | || |||| ||| || |||| ||||| || Sbjct 1967 CTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGT 1908 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||| || ||||| ||||| || ||||| Sbjct 1907 TTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 >seq50902 Length=6384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| |||||| ||||| || || || |||| || |||| || | ||| Sbjct 4558 TGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCATCTTCGAGCTGT 4499 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||| ||||| || | || || |||||| |||| | |||||||||||| ||| || Sbjct 4498 TTTCCCGCAAAGATTAGCCTCTGTTGGTCCGGAGGGATCCCTTCTTTATCTTGAATCTTC 4439 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || | ||| ||||| | || || || | || || |||||||| || Sbjct 4438 GTTTTCACATTGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTGATGGTTTTACCCGTC 4379 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 |||||||| || ||||| ||||| Sbjct 4378 AAAGTCTTGACGAATATCTGCAT 4356 >seq204555 Length=10983 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| || || || |||| || |||| || | |||||| || ||||| Sbjct 1299 CTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCATCTTCGAGTTGTTTCCCCGCAAA 1358 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || ||||||||| | || | |||||||||||| ||| ||| || || | Sbjct 1359 GATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCTTGAATCTTTGCCTTTACATT 1418 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || |||| ||| || || | || || ||||||||||| | ||||| || Sbjct 1419 GTCAATCGTGTCTGAGCTCTCAACTTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTAAC 1478 Query 44110 AAATATTTGCAT 44121 ||||| ||||| Sbjct 1479 GAATATCTGCAT 1490 >seq117562 Length=2070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || |||||| |||||||| || || ||| || |||| || Sbjct 1895 ACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGCTAAGGTGCGTCCATCTTCG 1836 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| || || ||||| || | | ||||| ||| |||| | ||||| || || | Sbjct 1835 AGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGA 1776 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| || ||| ||| || | ||| || || | ||||| || || Sbjct 1775 ATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCTTG 1716 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| |||||||| Sbjct 1715 CCTGTCAAAGTCTTCACAAAGATTTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353622145677744