Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq54724 93.3 3e-14
seq50902 87.8 1e-12
seq204555 86.0 4e-12
seq117562 84.2 2e-11
>seq54724
Length=7877
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATC 43968
|||||||| || || || |||||| |||||||| || ||| | | | || | ||
Sbjct 2086 AACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGC-CGTC 2028
Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028
|| | ||| ||||| ||||| ||||| | ||||||||| |||| | ||||||||| ||
Sbjct 2027 CTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTC 1968
Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088
|| || ||| || | | | || |||| ||| || |||| ||||| ||
Sbjct 1967 CTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGT 1908
Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||||||| || ||||| ||||| || |||||
Sbjct 1907 TTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875
>seq50902
Length=6384
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978
|| || ||| |||||| ||||| || || || |||| || |||| || | |||
Sbjct 4558 TGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCATCTTCGAGCTGT 4499
Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038
||||| ||||| || | || || |||||| |||| | |||||||||||| ||| ||
Sbjct 4498 TTTCCCGCAAAGATTAGCCTCTGTTGGTCCGGAGGGATCCCTTCTTTATCTTGAATCTTC 4439
Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098
||| || | ||| ||||| | || || || | || || |||||||| ||
Sbjct 4438 GTTTTCACATTGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTGATGGTTTTACCCGTC 4379
Query 44099 AAAGTCTTCACAAATATTTGCAT 44121
|||||||| || ||||| |||||
Sbjct 4378 AAAGTCTTGACGAATATCTGCAT 4356
>seq204555
Length=10983
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| ||||| || || || |||| || |||| || | |||||| || |||||
Sbjct 1299 CTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCATCTTCGAGTTGTTTCCCCGCAAA 1358
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
|| | || ||||||||| | || | |||||||||||| ||| ||| || || |
Sbjct 1359 GATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCTTGAATCTTTGCCTTTACATT 1418
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
||| || |||| ||| || || | || || ||||||||||| | ||||| ||
Sbjct 1419 GTCAATCGTGTCTGAGCTCTCAACTTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTAAC 1478
Query 44110 AAATATTTGCAT 44121
||||| |||||
Sbjct 1479 GAATATCTGCAT 1490
>seq117562
Length=2070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||||||| || || |||||| |||||||| || || ||| || |||| ||
Sbjct 1895 ACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGCTAAGGTGCGTCCATCTTCG 1836
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| ||| || || ||||| || | | ||||| ||| |||| | ||||| || || |
Sbjct 1835 AGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGA 1776
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || ||||| || ||| ||| || | ||| || || | ||||| || ||
Sbjct 1775 ATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCTTG 1716
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || |||||||||||||| ||||||||
Sbjct 1715 CCTGTCAAAGTCTTCACAAAGATTTGCAT 1687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 353622145677744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |