Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_005083.2
Length=244834
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 141 1e-28
>seq249645
Length=476466
Score = 141 bits (156), Expect = 1e-28
Identities = 285/418 (68%), Gaps = 5/418 (1%)
Strand=Plus/Plus
Query 147137 AACTCAAAAACTTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCA 147196
|| |||||| || | ||||| || || || ||| |||| || ||||| || | |||||
Sbjct 264542 AATTCAAAATCT--CACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCA 264599
Query 147197 ATTTAGCTCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCGT-TCGATCAACAAGGTAT 147255
||||||||||| || |||||||| ||| || | ||| | || ||||||
Sbjct 264600 GTTTAGCTCGTGCGTCTTAATCGAATGTGGTGA-TAGCTTAGACTCTATCAACGCCACCA 264658
Query 147256 CTGAAGCTATCGTTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAA 147315
|| || ||||| || | | ||||| ||||| ||| | |||| ||| |
Sbjct 264659 CTAGCGCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTA 264718
Query 147316 TTCGAGCAGAGGGTTCGGTTGTACGTGCGGGTGAAATTCGTCACACTGGCGTAATTCCTT 147375
| || || ||| | | |||| |||||| | || |||||| |||||||
Sbjct 264719 TCCGTGCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTT 264778
Query 147376 TCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTG 147435
| | ||| || || || || ||||||| || || |||||||| |||||||||||||
Sbjct 264779 TTTATAAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTG 264838
Query 147436 CTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGA 147495
||||||| || ||||| | ||||| |||||||| || | || || || || |
Sbjct 264839 CTGCGACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAA 264898
Query 147496 ACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATCAATTAA 147553
| ||| ||||||||||| |||||| | |||||| | |||||| ||||| || ||||
Sbjct 264899 ATAACCGCGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTA-CAGTTAA 264955
Score = 122 bits (134), Expect = 1e-22
Identities = 521/800 (65%), Gaps = 39/800 (5%)
Strand=Plus/Plus
Query 147831 CAATCTAACTTGTGTATGGAAATCGCGCTACCGACGTACCCGCTTGGTA-CTTCAT--AT 147887
|| || ||| | |||||||||||||| |||||||| | || |||| || | ||| |
Sbjct 265240 CAGTCAAACCTATGTATGGAAATCGCCCTACCGACCAAGCCACTTGATAACATCAATGAC 265299
Query 147888 GAAG------AAATCGCACTTTGTACGCTTGCTGCTTACAACTTAGGTGCAATCGAAT-C 147940
|||| ||||||| || |||||||| | || |||||| ||| | ||||| |
Sbjct 265300 GAAGCAGGCGAAATCGCCCTATGTACGCTATCAGCGGTCAACTTGGGTAAAGTCGAAAAC 265359
Query 147941 GCCGAGTGAATTTGCTCGACTGGC---GCCAATCGTTATTCGTGCGCTTGATAATCTACT 147997
| | || || | | | || || |||||| |||||||||||| |||||
Sbjct 265360 GTC-AGCGACATCGAAGAGCCAGCCGAGCTAATCGTG---CGTGCGCTTGATGCCCTACT 265415
Query 147998 AGATTACCAAGATTATCCAGTAGAAGCCGCTGAAAAAG-CAAAATA--TCGTCGCGCATT 148054
|| |||||||| ||||| || |||| ||| |||| | || || |||||| | |
Sbjct 265416 CGACTACCAAGACTATCCCGTCAAAGCGGCTCAAAACGGCAGCATGCGTCGTCGTACGCT 265475
Query 148055 GGGTATCGGTATCACTAACTTTGCATATTTCTTGGCAAAGAACTTCGTTGGATAC---GA 148111
||| | || | | ||||| ||| |||| ||| || || || ||| | || ||
Sbjct 265476 AGGTGTAGGCGTGATTAACTATGCGTATTACTTAGCCAAAAATGGCGTGCGCTATTCTGA 265535
Query 148112 CT-CATCA-GCTAAGTATCTCGTGCATGAATGGATGGAAGCAATGTCTTACTACAACATT 148169
| || | ||| || | | ||| | | | |||||| || | ||| | |
Sbjct 265536 CGACAGCGCGCTTGGTCTGACC--CATCAGACGTTTGAAGCATTGCAGTTCTATCTCTTA 265593
Query 148170 CAAGCATCAATGATGTTAGCAAAAGAGCGTGGCGCGAACAAATGGCATCG-TAAGACGCG 148228
|||| |||| | || |||||||||| |||||| || || | ||||
Sbjct 265594 AAAGCGTCAAACAAATTGGCAAAAGAGCAAGGCGCGTGTCC-TGCGTTCAATGAGACCAC 265652
Query 148229 CTGGGCTAAAGGTCAGTTGCCAATTGACTGGTACAATAAAAATGTTGATAAGCT-TGTCA 148287
|| | ||||| ||||| ||||| |||||| ||| | | |||||| | || ||
Sbjct 265653 CTACTCACAAGGTATCTTGCCGATTGATACGTACAAAAAAGACTTGGATAAGATCTGCCA 265712
Query 148288 AGCCGAATTATAATCTAGACTGGGAAGCACTTCGCGCTGACGTAATTCGTTACGGTATGC 148347
|| | || | | |||| |||||| | || || | || | | | ||||| |||
Sbjct 265713 AGAGCCACTACATT-TAGATTGGGAAACGCTACGTGGCGAGATCACTGAGCACGGTCTGC 265771
Query 148348 GAAATGACACCACTTCAGCTTTCATGCCATGTGAAAGTAGTTCTCAGATTAGCAACAGCA 148407
| || ||| | || || ||||| | ||||| |||||| ||| |
Sbjct 265772 GCAACTCTACCCTAACCGCCTTGATGCCGTCTGAAACCTCAAGTCAGATCGCCAATGCGA 265831
Query 148408 CGAACGGTATTGAGCCACCACGTGGTCTAGTATCGA-CTAAGCAATCAAAAGATGGCGTT 148466
| |||||||| ||||||||||||||||| || || | | |||| ||||||||||||| |
Sbjct 265832 CCAACGGTATCGAGCCACCACGTGGTCTGGTCTCTATCAAAGC-ATCAAAAGATGGCATC 265890
Query 148467 TTCAACCAAGTTGTGCCTGAAGTTGACTTGCTGAAAGATGAATACGGACTTGCGTGGAAA 148526
|| || ||||| |||||||| ||||| ||| |||||| | |||| || ||| ||
Sbjct 265891 TTAAAGCAAGTCGTGCCTGAGATTGACAAGCTAAAAGATCAGTACGAGCTACTATGGCAA 265950
Query 148527 GTTTGCGAAAAAGATAACTTTGGTTATCTGACGCTAGTTGCAATCATGCAGAAGTTTGTT 148586
| |||| | || || ||||| || | ||| || || |||||||| || || ||
Sbjct 265951 -ATGCCGAACA--ATGAC---GGTTACCTAAAGCTGGTCGCTATCATGCAAAAATTCGTC 266004
Query 148587 GATCAAAGCATTTCAGCGAA 148606
|||||||| || || || ||
Sbjct 266005 GATCAAAGTATCTCTGCCAA 266024
Score = 84.2 bits (92), Expect = 3e-11
Identities = 116/161 (72%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 149364 TATCTGTGTATGCACGCAGTAAATGCTCTTGAAGCTATTCGATTCTACGTTTCATTCGCG 149423
|||||||| || || || || | || ||||| ||||| ||||| || || || ||
Sbjct 268767 TATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCT 268826
Query 149424 TGTACGTTCAACTTTGCCGAGCAAGGCA---TTATGGAAGGTAACGCTAAAGTAATGAAG 149480
|| |||| ||||| |||| ||| | ||||||||||| || ||| | || |||
Sbjct 268827 TGCTCGTTTGCGTTTGCTGAGC---GCAAATTGATGGAAGGTAATGCCAAAATCATTAAG 268883
Query 149481 CTGATTGCTCGTGATGAACAGCTTCACTTGAAAGGTACACA 149521
|| || |||||||||||| ||| || |||| |||||| ||
Sbjct 268884 CTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCA 268924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780724167558720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |