Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq249645 141 1e-28 >seq249645 Length=476466 Score = 141 bits (156), Expect = 1e-28 Identities = 285/418 (68%), Gaps = 5/418 (1%) Strand=Plus/Plus Query 147137 AACTCAAAAACTTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCA 147196 || |||||| || | ||||| || || || ||| |||| || ||||| || | ||||| Sbjct 264542 AATTCAAAATCT--CACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCA 264599 Query 147197 ATTTAGCTCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCGT-TCGATCAACAAGGTAT 147255 ||||||||||| || |||||||| ||| || | ||| | || |||||| Sbjct 264600 GTTTAGCTCGTGCGTCTTAATCGAATGTGGTGA-TAGCTTAGACTCTATCAACGCCACCA 264658 Query 147256 CTGAAGCTATCGTTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAA 147315 || || ||||| || | | ||||| ||||| ||| | |||| ||| | Sbjct 264659 CTAGCGCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTA 264718 Query 147316 TTCGAGCAGAGGGTTCGGTTGTACGTGCGGGTGAAATTCGTCACACTGGCGTAATTCCTT 147375 | || || ||| | | |||| |||||| | || |||||| ||||||| Sbjct 264719 TCCGTGCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTT 264778 Query 147376 TCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTG 147435 | | ||| || || || || ||||||| || || |||||||| ||||||||||||| Sbjct 264779 TTTATAAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTG 264838 Query 147436 CTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGA 147495 ||||||| || ||||| | ||||| |||||||| || | || || || || | Sbjct 264839 CTGCGACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAA 264898 Query 147496 ACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATCAATTAA 147553 | ||| ||||||||||| |||||| | |||||| | |||||| ||||| || |||| Sbjct 264899 ATAACCGCGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTA-CAGTTAA 264955 Score = 122 bits (134), Expect = 1e-22 Identities = 521/800 (65%), Gaps = 39/800 (5%) Strand=Plus/Plus Query 147831 CAATCTAACTTGTGTATGGAAATCGCGCTACCGACGTACCCGCTTGGTA-CTTCAT--AT 147887 || || ||| | |||||||||||||| |||||||| | || |||| || | ||| | Sbjct 265240 CAGTCAAACCTATGTATGGAAATCGCCCTACCGACCAAGCCACTTGATAACATCAATGAC 265299 Query 147888 GAAG------AAATCGCACTTTGTACGCTTGCTGCTTACAACTTAGGTGCAATCGAAT-C 147940 |||| ||||||| || |||||||| | || |||||| ||| | ||||| | Sbjct 265300 GAAGCAGGCGAAATCGCCCTATGTACGCTATCAGCGGTCAACTTGGGTAAAGTCGAAAAC 265359 Query 147941 GCCGAGTGAATTTGCTCGACTGGC---GCCAATCGTTATTCGTGCGCTTGATAATCTACT 147997 | | || || | | | || || |||||| |||||||||||| ||||| Sbjct 265360 GTC-AGCGACATCGAAGAGCCAGCCGAGCTAATCGTG---CGTGCGCTTGATGCCCTACT 265415 Query 147998 AGATTACCAAGATTATCCAGTAGAAGCCGCTGAAAAAG-CAAAATA--TCGTCGCGCATT 148054 || |||||||| ||||| || |||| ||| |||| | || || |||||| | | Sbjct 265416 CGACTACCAAGACTATCCCGTCAAAGCGGCTCAAAACGGCAGCATGCGTCGTCGTACGCT 265475 Query 148055 GGGTATCGGTATCACTAACTTTGCATATTTCTTGGCAAAGAACTTCGTTGGATAC---GA 148111 ||| | || | | ||||| ||| |||| ||| || || || ||| | || || Sbjct 265476 AGGTGTAGGCGTGATTAACTATGCGTATTACTTAGCCAAAAATGGCGTGCGCTATTCTGA 265535 Query 148112 CT-CATCA-GCTAAGTATCTCGTGCATGAATGGATGGAAGCAATGTCTTACTACAACATT 148169 | || | ||| || | | ||| | | | |||||| || | ||| | | Sbjct 265536 CGACAGCGCGCTTGGTCTGACC--CATCAGACGTTTGAAGCATTGCAGTTCTATCTCTTA 265593 Query 148170 CAAGCATCAATGATGTTAGCAAAAGAGCGTGGCGCGAACAAATGGCATCG-TAAGACGCG 148228 |||| |||| | || |||||||||| |||||| || || | |||| Sbjct 265594 AAAGCGTCAAACAAATTGGCAAAAGAGCAAGGCGCGTGTCC-TGCGTTCAATGAGACCAC 265652 Query 148229 CTGGGCTAAAGGTCAGTTGCCAATTGACTGGTACAATAAAAATGTTGATAAGCT-TGTCA 148287 || | ||||| ||||| ||||| |||||| ||| | | |||||| | || || Sbjct 265653 CTACTCACAAGGTATCTTGCCGATTGATACGTACAAAAAAGACTTGGATAAGATCTGCCA 265712 Query 148288 AGCCGAATTATAATCTAGACTGGGAAGCACTTCGCGCTGACGTAATTCGTTACGGTATGC 148347 || | || | | |||| |||||| | || || | || | | | ||||| ||| Sbjct 265713 AGAGCCACTACATT-TAGATTGGGAAACGCTACGTGGCGAGATCACTGAGCACGGTCTGC 265771 Query 148348 GAAATGACACCACTTCAGCTTTCATGCCATGTGAAAGTAGTTCTCAGATTAGCAACAGCA 148407 | || ||| | || || ||||| | ||||| |||||| ||| | Sbjct 265772 GCAACTCTACCCTAACCGCCTTGATGCCGTCTGAAACCTCAAGTCAGATCGCCAATGCGA 265831 Query 148408 CGAACGGTATTGAGCCACCACGTGGTCTAGTATCGA-CTAAGCAATCAAAAGATGGCGTT 148466 | |||||||| ||||||||||||||||| || || | | |||| ||||||||||||| | Sbjct 265832 CCAACGGTATCGAGCCACCACGTGGTCTGGTCTCTATCAAAGC-ATCAAAAGATGGCATC 265890 Query 148467 TTCAACCAAGTTGTGCCTGAAGTTGACTTGCTGAAAGATGAATACGGACTTGCGTGGAAA 148526 || || ||||| |||||||| ||||| ||| |||||| | |||| || ||| || Sbjct 265891 TTAAAGCAAGTCGTGCCTGAGATTGACAAGCTAAAAGATCAGTACGAGCTACTATGGCAA 265950 Query 148527 GTTTGCGAAAAAGATAACTTTGGTTATCTGACGCTAGTTGCAATCATGCAGAAGTTTGTT 148586 | |||| | || || ||||| || | ||| || || |||||||| || || || Sbjct 265951 -ATGCCGAACA--ATGAC---GGTTACCTAAAGCTGGTCGCTATCATGCAAAAATTCGTC 266004 Query 148587 GATCAAAGCATTTCAGCGAA 148606 |||||||| || || || || Sbjct 266005 GATCAAAGTATCTCTGCCAA 266024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 149364 TATCTGTGTATGCACGCAGTAAATGCTCTTGAAGCTATTCGATTCTACGTTTCATTCGCG 149423 |||||||| || || || || | || ||||| ||||| ||||| || || || || Sbjct 268767 TATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCT 268826 Query 149424 TGTACGTTCAACTTTGCCGAGCAAGGCA---TTATGGAAGGTAACGCTAAAGTAATGAAG 149480 || |||| ||||| |||| ||| | ||||||||||| || ||| | || ||| Sbjct 268827 TGCTCGTTTGCGTTTGCTGAGC---GCAAATTGATGGAAGGTAATGCCAAAATCATTAAG 268883 Query 149481 CTGATTGCTCGTGATGAACAGCTTCACTTGAAAGGTACACA 149521 || || |||||||||||| ||| || |||| |||||| || Sbjct 268884 CTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCA 268924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780724167558720