Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq210337 89.7 4e-13
seq214945 84.2 2e-11
>seq210337
Length=1863
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| || || |||||||| || || |||||||| ||| ||| | ||| ||
Sbjct 376 ACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTCA 435
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| ||||| || || | || || |||||||| || || | ||||||||||| |
Sbjct 436 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGA 495
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178
||||| ||||| | ||| || || | || | || |||| |||||| || ||
Sbjct 496 ATTTTAGCCTTCACATTATCAATAGTGTC-CGAGCTCTCAACCTCCAAGGTAATAGTCTT 554
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
||| ||||| || || ||||| |||||||||
Sbjct 555 GCCTGTCAAAGTCTTCACAAAGATTTGCATT 585
>seq214945
Length=15579
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
||||||| |||||| | ||||| || || | || || ||||| ||||||||||| ||
Sbjct 5488 CCTCCTCTTAACCTGAGAACCAAGTGGAGAGCTGACTCCTTTTGGATGTTGTAATCAGCC 5547
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGG 20100
| ||| | |||||||| ||||| || ||| | || || |||||||| || || |||
Sbjct 5548 AAAGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGGTCTGAAGGG 5607
Query 20101 CACGCCTTCTTTGTC 20115
|| |||||||| ||
Sbjct 5608 -ACTCCTTCTTTCTC 5621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418220671099068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |