Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq210337 89.7 4e-13 seq214945 84.2 2e-11 >seq210337 Length=1863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || |||||||| || || |||||||| ||| ||| | ||| || Sbjct 376 ACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTCA 435 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || || | || || |||||||| || || | ||||||||||| | Sbjct 436 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGA 495 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||||| | ||| || || | || | || |||| |||||| || || Sbjct 496 ATTTTAGCCTTCACATTATCAATAGTGTC-CGAGCTCTCAACCTCCAAGGTAATAGTCTT 554 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| ||||| || || ||||| ||||||||| Sbjct 555 GCCTGTCAAAGTCTTCACAAAGATTTGCATT 585 >seq214945 Length=15579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| |||||| | ||||| || || | || || ||||| ||||||||||| || Sbjct 5488 CCTCCTCTTAACCTGAGAACCAAGTGGAGAGCTGACTCCTTTTGGATGTTGTAATCAGCC 5547 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGG 20100 | ||| | |||||||| ||||| || ||| | || || |||||||| || || ||| Sbjct 5548 AAAGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGGTCTGAAGGG 5607 Query 20101 CACGCCTTCTTTGTC 20115 || |||||||| || Sbjct 5608 -ACTCCTTCTTTCTC 5621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418220671099068