Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq26767 163 4e-35 seq249645 134 2e-26 >seq26767 Length=1149 Score = 163 bits (180), Expect = 4e-35 Identities = 278/403 (69%), Gaps = 0/403 (0%) Strand=Plus/Plus Query 43625 TTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTG 43684 || || ||||| | | || |||| || || | || ||||||||| | |||| | || Sbjct 40 TTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTA 99 Query 43685 TTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCA 43744 ||||| | ||| | | |||||| ||||| |||||| |||||||| | | ||| || Sbjct 100 TTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCC 159 Query 43745 GCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAG 43804 || ||||| | || || || || || || |||||| ||| | || |||| ||| | Sbjct 160 GCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAA 219 Query 43805 AACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGA 43864 || |||||| |||||| || |||| ||| ||| ||| || |||| | |||||| Sbjct 220 AAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGA 279 Query 43865 ATAGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTT 43924 || ||| | || ||||| || || || |||| || ||| | || || ||||| Sbjct 280 ATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTA 339 Query 43925 GCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAAC 43984 | ||||||||||| ||| || | || | | ||| || || ||||||||||| Sbjct 340 GTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAAT 399 Query 43985 TGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTA 44027 || ||||| || |||| ||| |||| | |||||| ||||||| Sbjct 400 TGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTA 442 >seq249645 Length=476466 Score = 134 bits (148), Expect = 2e-26 Identities = 263/389 (68%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 43640 CCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGAACAAGG 43699 |||||||| | || || | || || ||||| || || ||| ||||| || || || Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885 Query 43700 ATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCGCGTACA 43759 | | |||||||| | |||||| | ||| ||| | | || ||||| || || ||||| Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825 Query 43760 CCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATAATACCA 43819 ||||| |||||||| | ||| || || || ||||| |||| | || |||||| ||| Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765 Query 43820 GTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCACCGTTG 43879 || || | ||||||| | || || | ||| |||||| ||| || ||||| Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTG 264705 Query 43880 ATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGCGTTAATG 43939 || ||||||||||| || | | |||| ||||| | || | ||| ||||| || Sbjct 264704 ATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGTTGATA 264645 Query 43940 CTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTCGGGGTT 43999 || | || || | |||||| ||||| ||||||||||| || | || || Sbjct 264644 GAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGATGGCGTA 264585 Query 44000 CGAACACCAGCAAGAATTGGCGTCGGTAG 44028 || ||||| | | |||||||| ||||| Sbjct 264584 CGCACACCTGACATGATTGGCGTTGGTAG 264556 Score = 114 bits (126), Expect = 2e-20 Identities = 220/320 (69%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 41649 GGATCATAATAAGTATTTGCACTAATCATTTGATCCACAAACTTCTGCATGATAGCTACA 41708 ||||| || | |||||| ||| || ||||||| || || || ||||||||||| || Sbjct 266039 GGATCGTAGTTAGTATTGGCAGAGATACTTTGATCGACGAATTTTTGCATGATAGCGACC 265980 Query 41709 ATGTCCAAGTAACCCTTCATGCCGTGTTTGGTCATCTGCCAAGCTGTCTCATACTCGCTA 41768 | | | |||||| | ||| |||| || ||| ||||| | ||| |||| Sbjct 265979 AGCTTTAGGTAACCGT-CAT----TGTTCGG-CATTTGCCATAGTAGCTCGTACTGATCT 265926 Query 41769 CCAAGCATGTCTACCTCAGGCACTAGCTGATTAAAGACACCATCTTTCGATTGCTTGGTG 41828 ||| |||| | ||||||||| | || || |||| |||||||| ||| ||| | Sbjct 265925 TTTAGCTTGTCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATA 265866 Query 41829 CTCACTAGGCCGCGCGGTGGCTCGATACCGTTTGTGCTGTTGGTGATCTG---TGAACTA 41885 || || || || ||||||||||||||||| || |||| |||||| ||| Sbjct 265865 GAGACCAGACCACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGA---G 265809 Query 41886 CTCTCACAAGGCATAAATGCGCTTAGAGTATCGTTTCGCAGGCCGTGCTGTTTGATCTCA 41945 | ||| | ||||| || ||| |||| ||| ||| ||||| ||||||| ||||||| Sbjct 265808 GTTTCAGACGGCATCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGATCTCG 265749 Query 41946 GCTCGCAGCCATTCCCAATC 41965 | || ||| ||||||||| Sbjct 265748 CCACGTAGCGTTTCCCAATC 265729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743728161350720