Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_005260.1
Length=233234
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 163 4e-35
seq249645 134 2e-26
>seq26767
Length=1149
Score = 163 bits (180), Expect = 4e-35
Identities = 278/403 (69%), Gaps = 0/403 (0%)
Strand=Plus/Plus
Query 43625 TTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTG 43684
|| || ||||| | | || |||| || || | || ||||||||| | |||| | ||
Sbjct 40 TTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTA 99
Query 43685 TTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCA 43744
||||| | ||| | | |||||| ||||| |||||| |||||||| | | ||| ||
Sbjct 100 TTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCC 159
Query 43745 GCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAG 43804
|| ||||| | || || || || || || |||||| ||| | || |||| ||| |
Sbjct 160 GCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAA 219
Query 43805 AACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGA 43864
|| |||||| |||||| || |||| ||| ||| ||| || |||| | ||||||
Sbjct 220 AAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGA 279
Query 43865 ATAGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTT 43924
|| ||| | || ||||| || || || |||| || ||| | || || |||||
Sbjct 280 ATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTA 339
Query 43925 GCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAAC 43984
| ||||||||||| ||| || | || | | ||| || || |||||||||||
Sbjct 340 GTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAAT 399
Query 43985 TGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTA 44027
|| ||||| || |||| ||| |||| | |||||| |||||||
Sbjct 400 TGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTA 442
>seq249645
Length=476466
Score = 134 bits (148), Expect = 2e-26
Identities = 263/389 (68%), Gaps = 0/389 (0%)
Strand=Plus/Minus
Query 43640 CCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGAACAAGG 43699
|||||||| | || || | || || ||||| || || ||| ||||| || || ||
Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885
Query 43700 ATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCGCGTACA 43759
| | |||||||| | |||||| | ||| ||| | | || ||||| || || |||||
Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825
Query 43760 CCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATAATACCA 43819
||||| |||||||| | ||| || || || ||||| |||| | || |||||| |||
Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765
Query 43820 GTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCACCGTTG 43879
|| || | ||||||| | || || | ||| |||||| ||| || |||||
Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTG 264705
Query 43880 ATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGCGTTAATG 43939
|| ||||||||||| || | | |||| ||||| | || | ||| ||||| ||
Sbjct 264704 ATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGTTGATA 264645
Query 43940 CTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTCGGGGTT 43999
|| | || || | |||||| ||||| ||||||||||| || | || ||
Sbjct 264644 GAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGATGGCGTA 264585
Query 44000 CGAACACCAGCAAGAATTGGCGTCGGTAG 44028
|| ||||| | | |||||||| |||||
Sbjct 264584 CGCACACCTGACATGATTGGCGTTGGTAG 264556
Score = 114 bits (126), Expect = 2e-20
Identities = 220/320 (69%), Gaps = 12/320 (4%)
Strand=Plus/Minus
Query 41649 GGATCATAATAAGTATTTGCACTAATCATTTGATCCACAAACTTCTGCATGATAGCTACA 41708
||||| || | |||||| ||| || ||||||| || || || ||||||||||| ||
Sbjct 266039 GGATCGTAGTTAGTATTGGCAGAGATACTTTGATCGACGAATTTTTGCATGATAGCGACC 265980
Query 41709 ATGTCCAAGTAACCCTTCATGCCGTGTTTGGTCATCTGCCAAGCTGTCTCATACTCGCTA 41768
| | | |||||| | ||| |||| || ||| ||||| | ||| ||||
Sbjct 265979 AGCTTTAGGTAACCGT-CAT----TGTTCGG-CATTTGCCATAGTAGCTCGTACTGATCT 265926
Query 41769 CCAAGCATGTCTACCTCAGGCACTAGCTGATTAAAGACACCATCTTTCGATTGCTTGGTG 41828
||| |||| | ||||||||| | || || |||| |||||||| ||| ||| |
Sbjct 265925 TTTAGCTTGTCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATA 265866
Query 41829 CTCACTAGGCCGCGCGGTGGCTCGATACCGTTTGTGCTGTTGGTGATCTG---TGAACTA 41885
|| || || || ||||||||||||||||| || |||| |||||| |||
Sbjct 265865 GAGACCAGACCACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGA---G 265809
Query 41886 CTCTCACAAGGCATAAATGCGCTTAGAGTATCGTTTCGCAGGCCGTGCTGTTTGATCTCA 41945
| ||| | ||||| || ||| |||| ||| ||| ||||| ||||||| |||||||
Sbjct 265808 GTTTCAGACGGCATCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGATCTCG 265749
Query 41946 GCTCGCAGCCATTCCCAATC 41965
| || ||| |||||||||
Sbjct 265748 CCACGTAGCGTTTCCCAATC 265729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743728161350720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |