Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq54724 109 5e-19 seq210337 98.7 8e-16 seq167623 96.9 3e-15 seq26661 93.3 4e-14 seq117562 89.7 4e-13 seq153189 86.0 5e-12 >seq54724 Length=7877 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| || || ||||| ||| ||||| || ||||||||||| || Sbjct 1646 ACCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGC 1587 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||| |||||| ||| || | || || | |||||||||| || Sbjct 1586 CAAGGTACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 1527 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||| ||| ||| || ||| | | | || || ||||| | | ||| Sbjct 1526 AATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCG--ATCGTATCAGAACTTTCC 1469 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || |||||||||||||||||||| ||||||||| Sbjct 1468 ACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 1418 >seq210337 Length=1863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| | ||||| || |||||| |||||||||||||| ||||| || | ||| Sbjct 601 AACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCCAAAGTCCGACCATCC 660 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || ||||||||||| || | || | | ||||||||| || | || |||||||||| Sbjct 661 TCGAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGGATACCTTCCTTGTCC 720 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || | |||| ||| | || |||||| Sbjct 721 TGGATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCCACCTCAAGAGTAATGGTT 780 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || ||||| ||||||||||| Sbjct 781 TTACCGGTAAGGGTCTTCACGAAAATCTGCAT 812 >seq167623 Length=7090 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| || ||||||||||| || | || |||| || || || Sbjct 2596 ATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTG 2537 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || |||| || |||||||||||| || | | ||||||||| || || Sbjct 2536 TTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 2477 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | |||| | | |||||||||| || || ||||| ||||| || || ||||| Sbjct 2476 CGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGT 2417 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCTTGA 48736 || |||||||| || ||||||||| |||||| Sbjct 2416 TAGGGTTTTCACGAAGATCTGCATC---TCTTGA 2386 >seq26661 Length=2801 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| ||| || ||||| || |||||||| ||||||||||| || Sbjct 1173 ACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGC 1114 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||| ||||| || | | || | | |||||||||| || Sbjct 1113 CAAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 1054 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | || |||||||||| || || ||| | | | | | || || || | | ||| Sbjct 1053 AATACCTTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCA 995 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || ||||||||||||||||| || ||||||||| Sbjct 994 CCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 945 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | || | |||||| || |||||| ||||||||||| || ||| Sbjct 1628 CCTCCACGAAGCCTGAGGACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 1569 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || ||| |||| || || ||||| ||| || | || || | |||||||||| || Sbjct 1568 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGA 1509 Query 48620 ACACTTTCCTTGTCC 48634 | || |||||||||| Sbjct 1508 ATACCTTCCTTGTCC 1494 >seq117562 Length=2070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| || |||||||| || | || || ||||| |||||| || | Sbjct 1194 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 1135 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || || || ||||||||| || | | |||||||||| || || ||||| | Sbjct 1134 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTT 1075 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | ||| ||||| |||||||| || || |||||||||||| Sbjct 1074 GTCG--ATGGTGTCAGAGCTCTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTC 1017 Query 48713 ACAAAAATCTGCATC 48727 || || || |||||| Sbjct 1016 ACGAATATTTGCATC 1002 >seq153189 Length=17048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGT 48572 |||||| || || | || ||||||||||||||||||||| | ||| ||| || | | Sbjct 14721 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCG-CAAGTGTGCGACCAT 14663 Query 48573 CCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGT 48632 |||| ||||| ||||| || | || | ||||||||| ||| || | | |||||||| Sbjct 14662 CCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGT 14603 Query 48633 CCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || || ||||| | ||||| || | |||| ||||| || || | Sbjct 14602 CCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAG 14543 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || | ||||| || || |||||||| Sbjct 14542 TCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556 ||||| || || | | |||||| || || | || ||||||||||||||||||||| Sbjct 14966 AAACCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCC 14907 Query 48557 GCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615 | ||| ||| || | ||||| ||||| ||||| || | || | ||||||||| ||| Sbjct 14906 G-CAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGG 14848 Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC 48675 || | | |||||||||| || || ||||| | ||||| || | || ||| Sbjct 14847 TGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAG-AG-CTC 14790 Query 48676 -CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || | || || || || || || ||||| || || ||||||||||| Sbjct 14789 TCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419879251715228