Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq54724 109 5e-19
seq210337 98.7 8e-16
seq167623 96.9 3e-15
seq26661 93.3 4e-14
seq117562 89.7 4e-13
seq153189 86.0 5e-12
>seq54724
Length=7877
Score = 109 bits (120), Expect = 5e-19
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||||| || || ||||| ||| ||||| || ||||||||||| ||
Sbjct 1646 ACCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGC 1587
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || |||| |||||| ||| || | || || | |||||||||| ||
Sbjct 1586 CAAGGTACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 1527
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676
| | |||||| ||| ||| || ||| | | | || || ||||| | | |||
Sbjct 1526 AATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCG--ATCGTATCAGAACTTTCC 1469
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || || || |||||||||||||||||||| |||||||||
Sbjct 1468 ACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 1418
>seq210337
Length=1863
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
||||| | ||||| || |||||| |||||||||||||| ||||| || | |||
Sbjct 601 AACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCCAAAGTCCGACCATCC 660
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|| ||||||||||| || | || | | ||||||||| || | || ||||||||||
Sbjct 661 TCGAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGGATACCTTCCTTGTCC 720
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||| | | | || || || | |||| ||| | || ||||||
Sbjct 721 TGGATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCCACCTCAAGAGTAATGGTT 780
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||| || || ||||| |||||||||||
Sbjct 781 TTACCGGTAAGGGTCTTCACGAAAATCTGCAT 812
>seq167623
Length=7090
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/214 (70%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
|||||| || ||||| || ||||||||||| || | || |||| || || ||
Sbjct 2596 ATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTG 2537
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|| ||| || |||| || |||||||||||| || | | ||||||||| || ||
Sbjct 2536 TTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 2477
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
| |||| | | |||||||||| || || ||||| ||||| || || |||||
Sbjct 2476 CGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGT 2417
Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCTTGA 48736
|| |||||||| || ||||||||| ||||||
Sbjct 2416 TAGGGTTTTCACGAAGATCTGCATC---TCTTGA 2386
>seq26661
Length=2801
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||||| ||| || ||||| || |||||||| ||||||||||| ||
Sbjct 1173 ACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGC 1114
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || |||| ||||| || | | || | | |||||||||| ||
Sbjct 1113 CAAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 1054
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677
| || |||||||||| || || ||| | | | | | || || || | | |||
Sbjct 1053 AATACCTTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCA 995
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || || || ||||||||||||||||| || |||||||||
Sbjct 994 CCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 945
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| || | ||| | || | |||||| || |||||| ||||||||||| || |||
Sbjct 1628 CCTCCACGAAGCCTGAGGACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 1569
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| ||| |||| || || ||||| ||| || | || || | |||||||||| ||
Sbjct 1568 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGA 1509
Query 48620 ACACTTTCCTTGTCC 48634
| || ||||||||||
Sbjct 1508 ATACCTTCCTTGTCC 1494
>seq117562
Length=2070
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||| || |||||||| || | || || ||||| |||||| || |
Sbjct 1194 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 1135
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| || || ||||||||| || | | |||||||||| || || ||||| |
Sbjct 1134 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTT 1075
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || ||||| || | ||| ||||| |||||||| || || ||||||||||||
Sbjct 1074 GTCG--ATGGTGTCAGAGCTCTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTC 1017
Query 48713 ACAAAAATCTGCATC 48727
|| || || ||||||
Sbjct 1016 ACGAATATTTGCATC 1002
>seq153189
Length=17048
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGT 48572
|||||| || || | || ||||||||||||||||||||| | ||| ||| || | |
Sbjct 14721 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCG-CAAGTGTGCGACCAT 14663
Query 48573 CCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGT 48632
|||| ||||| ||||| || | || | ||||||||| ||| || | | ||||||||
Sbjct 14662 CCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGT 14603
Query 48633 CCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692
|| || || ||||| | ||||| || | |||| ||||| || || |
Sbjct 14602 CCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAG 14543
Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| || | ||||| || || ||||||||
Sbjct 14542 TCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556
||||| || || | | |||||| || || | || |||||||||||||||||||||
Sbjct 14966 AAACCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCC 14907
Query 48557 GCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615
| ||| ||| || | ||||| ||||| ||||| || | || | ||||||||| |||
Sbjct 14906 G-CAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGG 14848
Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC 48675
|| | | |||||||||| || || ||||| | ||||| || | || |||
Sbjct 14847 TGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAG-AG-CTC 14790
Query 48676 -CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || | || || || || || || ||||| || || |||||||||||
Sbjct 14789 TCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419879251715228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |