Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq195258 259 3e-64 seq247695 156 3e-33 seq104206 95.1 7e-15 seq249537 84.2 1e-11 >seq195258 Length=1176 Score = 259 bits (286), Expect = 3e-64 Identities = 608/906 (67%), Gaps = 20/906 (2%) Strand=Plus/Minus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 ||||||||| ||||| | || || || ||| | ||||| | |||||| |||| || Sbjct 948 GCAGAACAATCTGTATTAGGCGGTTTGATGTTAGATAATGAACAATGGGATACAGTTTCA 889 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAAT-TTTCAGTGAGAT 71455 || | | | ||||| |||||||||| || | |||||||| ||| ||||| || || Sbjct 888 GAACATGTTGTTGCCGATGATTTTTTTAGTAAGCCTCATCGTTTAATATTTCAA-GAAAT 830 Query 71456 GGAGAGG-TTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTG 71514 | | | || || | | | || | || |||||||| ||||| || ||||| | | | Sbjct 829 GCAAAAACTTCTTGATTTA-GGATATCCTATTGATTTAATAACCCTATCTGAATCTTTAG 771 Query 71515 AACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGA 71574 |||| || ||||| |||||| ||| ||| | ||| | || | || || ||||||| | Sbjct 770 AACAAAAAGGTAAGTTAGAAAGCGTAGGTAGATTTTCTTATTTAGCTGAACTGTCAAAAA 711 Query 71575 ACACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTG 71634 |||| || ||| | ||||||||| ||| ||||| || || || | ||||| || | | Sbjct 710 ACACTCCTAGCACAGCAAATATTACTGCATATGCAGACATAGTAAGAGAACGTGCAATAG 651 Query 71635 TTCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCA-GGAT 71690 | | |||||||| | || |||||| ||||||| | |||||||||| |||| ||| Sbjct 650 TCAGAGAAATGATATTAGTAGCAAATAAAATAGCTAATGCTGGATATGACACGCAAGGAC 591 Query 71691 GGCAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAA 71750 | | || | ||| | || ||| || || | || || |||| || ||| Sbjct 590 GAAAA----AGTGAAGAACTACTAGATTATGCAGAATCTAGTGTATTCAAAATTGCAGAA 535 Query 71751 AAACGAC--AAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGG 71808 ||||| |||| || || |||| ||| | | | || || |||| ||| | Sbjct 534 AAACGTTTTAAAAAAGACTCAG--GTCCTAAAAACGTAGAACAAATACTTGATGAAACTG 477 Query 71809 TATCTCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGG 71868 | || | |||||| | || |||| |||||||||||| ||||| || || |||| | Sbjct 476 TGGCTAGTATAGAAAAATTATTTCTATCACCACATGATGGAGTAACTGGAATTAATACAG 417 Query 71869 GATTTACC--GATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGT 71926 ||| ||| ||| | ||||| || ||| |||| | || | || || || || ||| | Sbjct 416 GAT--ACCAAGATTTAAATAAAAAAACGTCAGGTTTACAACGTTCTGAACTAATTATTAT 359 Query 71927 CGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGC 71986 ||||| | ||||||||||| || || || ||||| |||||| | |||||||| || Sbjct 358 TGCCGCAAGACCATCTATGGGAAAAACAACATTTGCAATGAATTTATGTGAAAATGCTGC 299 Query 71987 AGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGAT 72046 | | | | | ||||| || ||||| ||||||| | || ||||| | | || | || Sbjct 298 AATGCTTTATGATAAACCAGTATTAATTTTTAGTTTAGAAATGCCAGGAGAACAAATTAT 239 Query 72047 GATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACT 72106 |||||| | || || | | | ||| |||| | || ||||| || || ||||| Sbjct 238 GATGCGGATGTTAGCATCATTATCTAGAGTTAATCAAGCACGAATTCGTACTGGACAACT 179 Query 72107 TAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAA 72166 ||||| || |||||| | || | ||||| | || | || | | || |||| Sbjct 178 AAACGATGAAGATTGGTCACGCATGTCTGGTACTATTAACGTACTACTTAAAAAAAAGAA 119 Query 72167 TATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCG 72226 ||| | |||||||||||| || | || || | || | ||||| | |||||||| Sbjct 118 TATATATATTGATGACTCTTCAGCATTAACTCCTAATGAAGTTCGTTCAAGAGCTCGTCG 59 Query 72227 TGTTTA 72232 | |||| Sbjct 58 TATTTA 53 >seq247695 Length=360 Score = 156 bits (172), Expect = 3e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 72303 GATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAA 72362 || || || || || |||||||| || || ||| | | || || || | || || ||| Sbjct 64 GAAAATCGTACACTAGAAATTGCAGAAATATCTAGGACTCTAAAAGCACTTGCAAAAGAA 123 Query 72363 TTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGAC 72422 ||||||||||| || | ||| | |||||||| || || || | ||||| | | || Sbjct 124 TTACAAGTACCAGTTATTGCACTCTCACAACTGAACCGTTCTTTAGAACAAAGATCTGAT 183 Query 72423 AAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTG 72482 ||| |||| || ||||||||||||||||||||||| | | || || || || ||| | Sbjct 184 AAAAGACCTGTCAATTCAGATTTACGTGAATCAGGTTCTTTGGAACAAGATGCTGACTTA 243 Query 72483 ATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCC 72542 || ||||| | |||||||| ||| ||||||| |||| || | || || || || Sbjct 244 ATAATGTTCATATATCGCGATGAAATTTATCATGAAAATAGTGATTTCAAAGGAATAGCA 303 Query 72543 GAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTT 72598 || | || || ||||| ||| ||||||| || |||||||| || | ||| |||| Sbjct 304 GAAATTATAATAGGAAAACAAAGAAATGGTCCTATTGGCACAGTTTGTTTGACTTT 359 >seq104206 Length=286 Score = 95.1 bits (104), Expect = 7e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 21198 AAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTTGCTGAAATTGCGAGT 21257 ||||| |||| |||||||||| | | ||||| || || ||| | ||||||||||| | Sbjct 187 AAAGAAAAAACTGAATGGCATAGAATAGTTTTATTTGGTAAATTAGCTGAAATTGCAGGC 128 Query 21258 GAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTTAAAACCCGTAAGTGG 21317 || ||| | |||||||||||||| || || || ||||| | | |||| | || ||| Sbjct 127 GAATATCTTCGAAAAGGTTCTCAAGTATATATTGAAGGATCATTGCAAACTAGAAAATGG 68 Query 21318 ACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTCAGCCAGGGCGGCACC 21377 ||| | ||| ||||||| ||||| || |||||| | || | || || || Sbjct 67 CAGGATCAAAATGGTTTAGAACGCTACACTACAGAAATTGTTGTAAATATTGGAGGTACA 8 Query 21378 ATGCAAA 21384 ||||||| Sbjct 7 ATGCAAA 1 >seq249537 Length=1253 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 70937 CTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGTCCGG 70996 ||||||||||||||| ||||| |||||||||||||||| |||| | ||||||| ||| | Sbjct 1 CTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAATCCAG 60 Query 70997 TAGGGGCCA 71005 |||||||| Sbjct 61 CAGGGGCCA 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302247611092188