Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_005880.2
Length=148317
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 181 1e-40
seq111679 113 4e-20
>seq158858
Length=235449
Score = 181 bits (200), Expect = 1e-40
Identities = 585/895 (65%), Gaps = 20/895 (2%)
Strand=Plus/Plus
Query 135295 TTTTGGTTAACTAATTACCTAGAAACTATTATTAGTACTCAAACATGGCAAGCAATGACT 135354
|| ||| | |||||||| || ||||| || || | | ||| ||| | |||||||
Sbjct 214012 TTCTGGATTACTAATTATCTTGAAACAATCATGTCGAATGAAATTTGGTTACCAATGACA 214071
Query 135355 AGTGCTACACTAGCATATGATATGCGTAAAATGCTAGATAAATATG-CAATGGAAACAGT 135413
||||| || | | ||| | || || | ||| || ||||| | ||| |||||||
Sbjct 214072 AGTGCAACTGTTTCTTATCAGTACCGAAAGTTACTA-ATTGATATGGCTATGAAAACAGT 214130
Query 135414 AGGTAATATTGAAGCAGTAGATTTCCAGGGTCATGACTTTAGTATGCGTGGTATGAGTTC 135473
|||| || | | ||| || || | || || || |||||| || |||||
Sbjct 214131 AGGTCATGCAAACGATGTACCGTTTCAAGCACACGATTTCTCTATGCGCGGAATGAGCAG 214190
Query 135474 TTTAGAAACAGCTCAATTAAGTTCAGCAGGTCATGCAATTAGTTTTAAAGGTAGTGATAC 135533
||||| | ||| ||| |||||| || | | || ||| | |||||
Sbjct 214191 CTTAGAGTCTGCTATGGCGAGTGGAGCAGGACACTTATTATCATTCGTAGGAACAGATAC 214250
Query 135534 AGTACCTG-TAGTGGATTTCTT-AGAATCATATTACAATGCAGACGTAGAGAAGGAAATG 135591
|| || | || || | |||| || || ||||||||||| || | || |||||| |
Sbjct 214251 GGTTCCAGCTATTGCTTATCTTGAGCAT--TATTACAATGCGAACATTGAAAAGGAATTA 214308
Query 135592 GTTGTTGCTTCTATCCCTGCTACTGAGCACTCAGTAATGTGTGCAAATGGTAATTATGAA 135651
|| | | || || || |||||||| || ||||| |||| ||||| || ||
Sbjct 214309 GTAGGAACATCAATACCAGCTACTGAACATTCAGTTATGTCAGCAAACACAGATGCAGAT 214368
Query 135652 ACCATGGATGAGTATGAAACATATAAACGTATGTTAACAGAAATATATCCAACAGGCATT 135711
| | ||||| | |||| || || ||| | |||| || ||||||| | |||| |
Sbjct 214369 AGCCGTGATGAATTCGAAATGTACAAGCGTCTTATAACTGAGGTATATCCTAAAGGCTTC 214428
Query 135712 TTCTCTATTGTGTCTGATACTTGGGACTTTTGGG--GTAATATGACTAAAACTTTACCTA 135769
||| | | || || || || | || || |||| ||| || || || ||| |||
Sbjct 214429 TTCAGTGTAGTTTCAGACACGTATGATTTCTGGGCAGTAGTAGGAGAAATTCTT--CCTC 214486
Query 135770 GATTAAAGGATATTATTATGGAACGTAATGGTAAAGTAGTAATCAGACCTGATAGTGGAG 135829
| | ||| | || ||||||||| ||||| | || || | |||||||||||||
Sbjct 214487 GTCTTAAGAAGGAAATCATGGAACGTGATGGTCGTATGGTTATTCGTCCTGATAGTGGAG 214546
Query 135830 ACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGACACTGAATATGAACGTAAAGGTG 135889
|||||||| ||| || || |||| || ||| | || ||| ||||||||||||
Sbjct 214547 ACCCTGTTCTTATTCTTACTGGTAACCCAGAAGCAAAAACAGAACTTGAACGTAAAGGAC 214606
Query 135890 CAGTAGAAGTGCTTTGGGATACATTTGGAGGTACTGAAACTGAAAAAGGGTACAAAGTAT 135949
| | || | | ||||||| ||||| || || ||||| || || || ||| |||
Sbjct 214607 TAATTGAGGCTTTATGGGATATCTTTGGTGGAACAATTACTGAGAAGGGTTATAAACTAT 214666
Query 135950 TAGATGAACATGTAGGATTAATTTATGGAGACTCTATTAACTATGAACGTGCTCAACAAA 136009
||||| ||| | || ||| ||||| |||||||||| ||| ||||| || |
Sbjct 214667 TAGATACTCATATTGGTGCAATCTATGGTGACTCTATTACTCTTGAGCGTGCAAAAGCTA 214726
Query 136010 T--TTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTATTAATGTTGTATTAGGTGTAGG 136067
| ||| |||| ||| |||||||||| ||||| | || ||||| || || || ||
Sbjct 214727 TTGTTGAGAAG--TTAGAAGAAAAAGGCTTTGCTTCAACAAACGTTGTTTTCGGCGTGGG 214784
Query 136068 TAGTTTCTCTTACCAATTTAATACTCGTGATACCCACGGGTTTGCAATCAAAGCAACGTA 136127
|| ||| ||||| | | ||||| ||| | | |||||||| || ||||| || ||
Sbjct 214785 ATCTTATACTTTCCAATATCAGACTCGCGATTCTCTAGGGTTTGCTATGAAAGCTACATA 214844
Query 136128 TGCTAAGATTAAAAATGAAGAAAAAC--TTA-TCTATAAAAATCCTAAAACAGAT 136179
|||| | ||||| |||| ||| ||| | | || |||| |||||||||
Sbjct 214845 TGCT---GTAGTAAATGGAGAAGAACGTTTATTGTTCAAGGATCCAAAAACAGAT 214896
>seq111679
Length=1463
Score = 113 bits (124), Expect = 4e-20
Identities = 212/312 (68%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 20669 ATCATAGTCAAATTCAACTTGAGCAAAGCGGTCTAATGTAGCTCCGTCTAATTGTTGTCT 20728
|||||||| ||| || | | |||| | ||| |||||||| | |||| | || |
Sbjct 1143 ATCATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACG 1202
Query 20729 ACCTACATAAATATGGTCTGCTCCTGTTCCCATAGTATTACCTGCTGACACAACTCTGAA 20788
||| ||| ||||| ||||| | || | |||||| | || | ||| || | ||
Sbjct 1203 TCCTGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAA 1262
Query 20789 ATCTTCATGAGCTGTTACACGTCCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGA 20848
||| ||| ||| | ||| |||| || | |||||| ||| ||||| || |
Sbjct 1263 ATCAGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGC 1322
Query 20849 ATTAAGAATTAATAGTACTTCAGGAATAGATGCATCCATTTCATCTAAGAAGAATAACCC 20908
||| || || | || | || || | || |||||||||||||||||||| |||| ||
Sbjct 1323 ATTCAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACC 1382
Query 20909 ACCTTTTGTAAATGCTTTATAGAATTGGGTTTCATGAAACTTACCATTTGCATCAATAAA 20968
|| || ||||| |||| || || || || || ||| | ||||| || ||||||||
Sbjct 1383 CCCCTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAA 1442
Query 20969 TCCTGTTAATTT 20980
||| ||||||||
Sbjct 1443 TCCAGTTAATTT 1454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472901449353760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |