Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005880.2 Length=148317 Score E Sequences producing significant alignments: (Bits) Value seq158858 181 1e-40 seq111679 113 4e-20 >seq158858 Length=235449 Score = 181 bits (200), Expect = 1e-40 Identities = 585/895 (65%), Gaps = 20/895 (2%) Strand=Plus/Plus Query 135295 TTTTGGTTAACTAATTACCTAGAAACTATTATTAGTACTCAAACATGGCAAGCAATGACT 135354 || ||| | |||||||| || ||||| || || | | ||| ||| | ||||||| Sbjct 214012 TTCTGGATTACTAATTATCTTGAAACAATCATGTCGAATGAAATTTGGTTACCAATGACA 214071 Query 135355 AGTGCTACACTAGCATATGATATGCGTAAAATGCTAGATAAATATG-CAATGGAAACAGT 135413 ||||| || | | ||| | || || | ||| || ||||| | ||| ||||||| Sbjct 214072 AGTGCAACTGTTTCTTATCAGTACCGAAAGTTACTA-ATTGATATGGCTATGAAAACAGT 214130 Query 135414 AGGTAATATTGAAGCAGTAGATTTCCAGGGTCATGACTTTAGTATGCGTGGTATGAGTTC 135473 |||| || | | ||| || || | || || || |||||| || ||||| Sbjct 214131 AGGTCATGCAAACGATGTACCGTTTCAAGCACACGATTTCTCTATGCGCGGAATGAGCAG 214190 Query 135474 TTTAGAAACAGCTCAATTAAGTTCAGCAGGTCATGCAATTAGTTTTAAAGGTAGTGATAC 135533 ||||| | ||| ||| |||||| || | | || ||| | ||||| Sbjct 214191 CTTAGAGTCTGCTATGGCGAGTGGAGCAGGACACTTATTATCATTCGTAGGAACAGATAC 214250 Query 135534 AGTACCTG-TAGTGGATTTCTT-AGAATCATATTACAATGCAGACGTAGAGAAGGAAATG 135591 || || | || || | |||| || || ||||||||||| || | || |||||| | Sbjct 214251 GGTTCCAGCTATTGCTTATCTTGAGCAT--TATTACAATGCGAACATTGAAAAGGAATTA 214308 Query 135592 GTTGTTGCTTCTATCCCTGCTACTGAGCACTCAGTAATGTGTGCAAATGGTAATTATGAA 135651 || | | || || || |||||||| || ||||| |||| ||||| || || Sbjct 214309 GTAGGAACATCAATACCAGCTACTGAACATTCAGTTATGTCAGCAAACACAGATGCAGAT 214368 Query 135652 ACCATGGATGAGTATGAAACATATAAACGTATGTTAACAGAAATATATCCAACAGGCATT 135711 | | ||||| | |||| || || ||| | |||| || ||||||| | |||| | Sbjct 214369 AGCCGTGATGAATTCGAAATGTACAAGCGTCTTATAACTGAGGTATATCCTAAAGGCTTC 214428 Query 135712 TTCTCTATTGTGTCTGATACTTGGGACTTTTGGG--GTAATATGACTAAAACTTTACCTA 135769 ||| | | || || || || | || || |||| ||| || || || ||| ||| Sbjct 214429 TTCAGTGTAGTTTCAGACACGTATGATTTCTGGGCAGTAGTAGGAGAAATTCTT--CCTC 214486 Query 135770 GATTAAAGGATATTATTATGGAACGTAATGGTAAAGTAGTAATCAGACCTGATAGTGGAG 135829 | | ||| | || ||||||||| ||||| | || || | ||||||||||||| Sbjct 214487 GTCTTAAGAAGGAAATCATGGAACGTGATGGTCGTATGGTTATTCGTCCTGATAGTGGAG 214546 Query 135830 ACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGACACTGAATATGAACGTAAAGGTG 135889 |||||||| ||| || || |||| || ||| | || ||| |||||||||||| Sbjct 214547 ACCCTGTTCTTATTCTTACTGGTAACCCAGAAGCAAAAACAGAACTTGAACGTAAAGGAC 214606 Query 135890 CAGTAGAAGTGCTTTGGGATACATTTGGAGGTACTGAAACTGAAAAAGGGTACAAAGTAT 135949 | | || | | ||||||| ||||| || || ||||| || || || ||| ||| Sbjct 214607 TAATTGAGGCTTTATGGGATATCTTTGGTGGAACAATTACTGAGAAGGGTTATAAACTAT 214666 Query 135950 TAGATGAACATGTAGGATTAATTTATGGAGACTCTATTAACTATGAACGTGCTCAACAAA 136009 ||||| ||| | || ||| ||||| |||||||||| ||| ||||| || | Sbjct 214667 TAGATACTCATATTGGTGCAATCTATGGTGACTCTATTACTCTTGAGCGTGCAAAAGCTA 214726 Query 136010 T--TTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTATTAATGTTGTATTAGGTGTAGG 136067 | ||| |||| ||| |||||||||| ||||| | || ||||| || || || || Sbjct 214727 TTGTTGAGAAG--TTAGAAGAAAAAGGCTTTGCTTCAACAAACGTTGTTTTCGGCGTGGG 214784 Query 136068 TAGTTTCTCTTACCAATTTAATACTCGTGATACCCACGGGTTTGCAATCAAAGCAACGTA 136127 || ||| ||||| | | ||||| ||| | | |||||||| || ||||| || || Sbjct 214785 ATCTTATACTTTCCAATATCAGACTCGCGATTCTCTAGGGTTTGCTATGAAAGCTACATA 214844 Query 136128 TGCTAAGATTAAAAATGAAGAAAAAC--TTA-TCTATAAAAATCCTAAAACAGAT 136179 |||| | ||||| |||| ||| ||| | | || |||| ||||||||| Sbjct 214845 TGCT---GTAGTAAATGGAGAAGAACGTTTATTGTTCAAGGATCCAAAAACAGAT 214896 >seq111679 Length=1463 Score = 113 bits (124), Expect = 4e-20 Identities = 212/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 20669 ATCATAGTCAAATTCAACTTGAGCAAAGCGGTCTAATGTAGCTCCGTCTAATTGTTGTCT 20728 |||||||| ||| || | | |||| | ||| |||||||| | |||| | || | Sbjct 1143 ATCATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACG 1202 Query 20729 ACCTACATAAATATGGTCTGCTCCTGTTCCCATAGTATTACCTGCTGACACAACTCTGAA 20788 ||| ||| ||||| ||||| | || | |||||| | || | ||| || | || Sbjct 1203 TCCTGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAA 1262 Query 20789 ATCTTCATGAGCTGTTACACGTCCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGA 20848 ||| ||| ||| | ||| |||| || | |||||| ||| ||||| || | Sbjct 1263 ATCAGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGC 1322 Query 20849 ATTAAGAATTAATAGTACTTCAGGAATAGATGCATCCATTTCATCTAAGAAGAATAACCC 20908 ||| || || | || | || || | || |||||||||||||||||||| |||| || Sbjct 1323 ATTCAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACC 1382 Query 20909 ACCTTTTGTAAATGCTTTATAGAATTGGGTTTCATGAAACTTACCATTTGCATCAATAAA 20968 || || ||||| |||| || || || || || ||| | ||||| || |||||||| Sbjct 1383 CCCCTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAA 1442 Query 20969 TCCTGTTAATTT 20980 ||| |||||||| Sbjct 1443 TCCAGTTAATTT 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472901449353760