Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq85073 113 2e-20 seq198346 111 8e-20 seq99228 111 8e-20 seq181001 109 3e-19 seq134883 107 1e-18 seq103438 105 3e-18 seq197155 104 1e-17 seq5388 104 1e-17 seq251763 102 4e-17 seq222527 102 4e-17 seq175570 102 4e-17 seq170545 102 4e-17 seq163221 102 4e-17 seq103439 102 4e-17 seq50817 102 4e-17 seq85219 100 1e-16 seq204036 98.7 5e-16 seq74827 96.9 2e-15 seq105494 95.1 6e-15 seq85039 91.5 8e-14 seq94373 87.8 9e-13 >seq85073 Length=13292 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11446 AAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 5995 AAAATAATAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 6054 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| |||||||||||||||||||| || Sbjct 6055 CTCTAACCAACTGAGCTAATGGGCCTTC 6082 >seq198346 Length=14755 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 3172 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3113 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 3112 CAACTGAGCTAATGGGCC 3095 >seq99228 Length=25189 Score = 111 bits (122), Expect = 8e-20 Identities = 93/112 (83%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAA-----TAAAAA-ATCAAAT-TGGCCCATGAAAGGATCGAACC 11477 ||| ||||| | ||||| |||||| || | || ||||||||| | | ||||||| Sbjct 6129 AGGTAAATAATGTATTAAAAAGGTAAAAATATAACATATGGCCCATGCAGGTTTCGAACC 6188 Query 11478 TTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 6189 TGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 6240 >seq181001 Length=7599 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 6322 TGGCCCATGTAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 6263 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 6262 TGAGCTAATGGGCC 6249 >seq134883 Length=10963 Score = 107 bits (118), Expect = 1e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 1568 AAATTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1509 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 1508 CAACTGAGCTAATAGGCCATC 1488 >seq103438 Length=17099 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| ||||| || | ||||||||||| |||||||||||||||||||||| Sbjct 1576 AAAAAATAAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGA 1635 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 1636 CGCTCTAACCAACTGAGCTAATAGGCC 1662 >seq197155 Length=11782 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 8394 AAAAA--AACTTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 8451 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 8452 CTCTAACCAACTGAGCTAATAGGCC 8476 >seq5388 Length=4988 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 3313 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 3372 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 3373 CAACTGAGCTAATAGGCCTTC 3393 >seq251763 Length=5286 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 1761 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1820 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1821 CAACTGAGCTAATAGGCC 1838 >seq222527 Length=3128 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 406 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 347 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 346 CAACTGAGCTAATAGGCC 329 >seq175570 Length=12497 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 654 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 713 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 714 CAACTGAGCTAATAGGCC 731 >seq170545 Length=15494 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 11792 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 11733 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 11732 CAACTGAGCTAATAGGCC 11715 >seq163221 Length=17893 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 15781 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 15840 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 15841 CAACTGAGCTAATAGGCC 15858 >seq103439 Length=17744 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 16174 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 16115 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 16114 CAACTGAGCTAATAGGCC 16097 >seq50817 Length=4894 Score = 102 bits (112), Expect = 4e-17 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || ||| || || || || | ||||||||| || | | |||||||| ||||||||| Sbjct 3928 AAAATATTATCAAAAACAATTGAAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGC 3987 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| ||||||||||||||| |||| Sbjct 3988 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 4027 >seq85219 Length=8127 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 4986 AAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 5045 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 5046 AACTGAGCTAATAGGCC 5062 >seq204036 Length=14405 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 12224 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 12283 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 12284 CAGCTGAGCTAATAGGCC 12301 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||| ||||| ||||| |||||||||||||||||||||| |||||| Sbjct 12379 TGGCCTATACAGGGATCAAACCTGTGACCTACGCGTTATTAGCACGACGCTCTAACCAAC 12438 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 12439 TGAGCTAATAGGCC 12452 >seq74827 Length=6546 Score = 96.9 bits (106), Expect = 2e-15 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| | ||| ||||| || | | |||||||| |||||||||||||||||||||| Sbjct 3668 TAAAATAATAAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 3727 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 3728 CGCTCTAACCAACTGAGCTAATAGGCC 3754 >seq105494 Length=24330 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 15286 TCGAACCTGCGACCTTCGCGTTATTTGCACGACGCTCTAACCAACTGAGCTAATGGGCC 15228 >seq85039 Length=6500 Score = 91.5 bits (100), Expect = 8e-14 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||| || | | |||||||| |||||||||||||||||||||||||||| | Sbjct 3979 AAATGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 4038 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 4039 CCAACTGAGCTAATAGGCC 4057 >seq94373 Length=27073 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| ||| | | |||||| | || ||||||||||||||||| |||||||| | | Sbjct 20883 AAATGGCCTATGCAGGTTTCGAACTTGCGGCCTTCGCGTTATTAGCATGACGCTCTAAAC 20824 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 20823 AACTGAGCTAATGGGCC 20807 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260639564673328