Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_006356.2
Length=36012
Score E
Sequences producing significant alignments: (Bits) Value
seq541 324 3e-84
seq155643 165 2e-36
seq180879 143 6e-30
seq81957 109 1e-19
seq256562 80.6 6e-11
>seq541
Length=763
Score = 324 bits (358), Expect = 3e-84
Identities = 530/756 (70%), Gaps = 22/756 (3%)
Strand=Plus/Plus
Query 9713 GAATATAAGTTAAGAGAATATTCTTTTCTATCATCTTGGGCTGCTAATGAACTTAGCACG 9772
|| || || |||| || ||||| ||| | ||| ||||| || || ||| | || ||
Sbjct 9 GAGTACAAATTAATGGAGTATTCATTTTTGTCAAGTTGGGGAGCAAACGAATTAAGTACT 68
Query 9773 GTACAAGGAATGAAAAGTATTAAATCTACTTATGGAATATTAGAATTAATTGAAAAATCA 9832
||||||||| | ||||| || ||| ||| || || | ||||||||||| ||| |
Sbjct 69 GTACAAGGACTTAAAAGCATCAAAAGCCATTACGGTATTATGGAATTAATTGAGAAAGCT 128
Query 9833 TACAATTTGGATTATTCAGACGAGAGATTGAAACAAATTGAAACATTATTAAAAGCACTT 9892
|| || || |||||| || | ||||| | | | || ||| |||||||||| |||||
Sbjct 129 TATAACTTAGATTATAGCGATCAAAGATTAAGAAATATCGAAGAATTATTAAAATCACTT 188
Query 9893 ACAGATAAGCCGTTAGAACCTAACACTTT-AATGATTGAGCCGCTAGCATTAGATT-ACT 9950
| ||| ||||| |||| | |||||| || || |||||| | ||| || |||
Sbjct 189 TCGGATGAGCCGGCAGAAATTGTCACTTTGAACGAG-GAGCCGATTATATTGAATACACT 247
Query 9951 TAAAGAATTTTAAATTTTAACACAAACACACAAAAATGGAAGCATTAGAAATTAAAGTAG 10010
|||| ||||||| | ||||| | ||||| | | |||||||||||||||||||||||| |
Sbjct 248 TAAA-AATTTTACACTTTAAAAAAAACAAA-ACAAATGGAAGCATTAGAAATTAAAGCTG 305
Query 10011 CTTTAGAAGCTATTAAAGGACAAGTAGATAGTAAATCATCTGCACAGGCATTAGAGGTGA 10070
|||| |||| || |||| |||||| || | ||| | ||| || || | ||||| |
Sbjct 306 CTTTGGAAGGAATCAAAGCACAAGTTGAAACAAAAACTGCTGAGCAATCAGTTGAGGTTA 365
Query 10071 AAGGATTGATTGAAGCACTAGAGGCTAAAATGACATCTGAAAAGGATTTAGCAGTAAATG 10130
| || || |||||| ||||||| |||||| ||| |||| | | |||| |
Sbjct 366 AGTCTTTAATCGAAGCATTAGAGGCAAAAATGGAATCAAAAAACAACGAATCAGTTGTAG 425
Query 10131 AGTTGAAGTCAGATATGGCAGCATTACAAGCTCATGCTGATAAATTAGACGTAAAATTGA 10190
||||| | || || | || | |||| ||| ||||| |||||||| |||||
Sbjct 426 CATTGAAAGCTGAATTGAAATCAATTCAAGATCACGCTGACTTGTTAGACGTTAAATTAC 485
Query 10191 AAGAGAAAGCTAAATCTGAAGATAAGAGTGA-------TTC------ATTAGTAAAATCT 10237
|||||||| ||| |||| | |||| ||| ||| || | ||||| |
Sbjct 486 AAGAGAAA---AAAGCTGAGGCTAAGTCTGAAGGATATTTCGACGTAATGACTAAAACAT 542
Query 10238 ATTACTGAAAACTTTAATGATATTAAAGAAGTAAGAAACGGTAAATCTATTCAAGTTAAG 10297
|| |||||||||||||| || ||||||||||||| ||| |||||| | ||||| ||
Sbjct 543 TAAAC-GAAAACTTTAATGACATCAAAGAAGTAAGAAGCGGAAAATCTGTACAAGTGAAA 601
Query 10298 GCTGTAGGTGATATGACATTGCCAGTTAACTTAACAGGCGCACAACCTAAGGACTATAAC 10357
||||| || |||||||| ||| | | |||| ||||||| || ||||| || || ||||||
Sbjct 602 GCTGTTGGAGATATGACTTTGTCTGGTAACCTAACAGGTGCTCAACCAAAAGATTATAAC 661
Query 10358 TTTGATGTGGTATTGAATCCATCTCAAATGCTTAACGTTTCTGATATCGTAGGGGCTGTA 10417
|| || ||| ||| ||| |||| | | |||||| |||| | ||||| ||||
Sbjct 662 TTCAATACTGTAATGATCCCAGGTCAATTAGTAAACGTTGCTGACTTAGTAGGTTCTGTT 721
Query 10418 TCTATCTCAGGTGGTACATATACTTTCGTAAGAGAA 10453
|| || || ||||| ||||| ||| |||||||
Sbjct 722 AACATTTCTGGAGGTACTTATACATTCCCAAGAGAA 757
>seq155643
Length=347
Score = 165 bits (182), Expect = 2e-36
Identities = 246/347 (71%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 10688 GCTACAGCATCTACTGAAATTATTACAAATAAGAATAAAGTAGAAATGTTGATTAATGAA 10747
|| || ||||||||| ||| |||| | || || ||| | |||||||||||||||||
Sbjct 3 GCAACTGCATCTACTCAAACTATTGATGACAAAAACAAAATCGAAATGTTGATTAATGAG 62
Query 10748 ATTGCTAAGCAAGAAAACCTAGACTTTCCTGTTACAGCTATCGTTTTGAGACCTACAGAC 10807
|||||| ||||||| | ||||| |||| | | |||||||| | ||| | |||
Sbjct 63 GTTGCTACATTAGAAAACTCAAACTTTGCTGTAAACGGAATCGTTTTTCGTCCTTCTGAC 122
Query 10808 TACTATGACATTTTAGTTACTCAAAAGTCAGTAGGTGCAGGATATGGTTTACCAGGTGTG 10867
| ||| || ||| | ||| ||| |||| | | | ||||| || | || || |
Sbjct 123 TTCTACGATATTATGAAAACTGCAAAATCAGCATCTTCTGGATACGGACTTCCTGGAATC 182
Query 10868 GTAACACAAGATAACGGTGTACTAAGGATTAACGGAATTCCATTGTTTAGG--GCTACAT 10925
| || | || |||||| |||| || |||||||| | |||||| |||||||
Sbjct 183 GCTACTTACGACGGTGGTGTATTAAGAATCAACGGAATCGC--TGTTTACAAAGCTACAT 240
Query 10926 GGTTAGCAGCTAACAAATACTACGTAGGAGATTGGACTAGAGTTACAAAAGTAACTACTG 10985
|||| || ||||||||||| | || ||||| ||| | ||||||| |||||| ||||
Sbjct 241 GGTTGGCTGCTAACAAATATTTTGTTGGAGACTGGTCAAGAGTTAACAAAGTAGTTACTC 300
Query 10986 AGGGTCTTTCGTTAGAGTTTTCTGAAGTAGAAGGAACTAACTTTGTG 11032
| ||| | || |||||||| ||||| |||||| |||||||| |||
Sbjct 301 AAGGTTTATCTTTAGAGTTCTCTGAGCAAGAAGGTACTAACTTCGTG 347
>seq180879
Length=293
Score = 143 bits (158), Expect = 6e-30
Identities = 201/278 (72%), Gaps = 8/278 (3%)
Strand=Plus/Plus
Query 18044 GAAATAAATTTCACTATCCATGATATTTATGATTTGATAGGAGATAACGGTGGTTTTAAT 18103
||||| |||| || || |||||| |||||| ||| | || ||||| ||| ||
Sbjct 18 GAAATTGATTTTACAATGTTCGATATTAATGATTGGATTGATGACAACGGAGGTATTGGC 77
Query 18104 GGTGAGTTTTGCGCTTCTTTT-ACAAATGCTTTTAACGAATCAATGTTTAAAAACGTACC 18162
|| ||||| | |||| ||||| ||||||||||| || ||| ||| |||||||
Sbjct 78 GGAAGCTTTTGGAATGATTTTCACAAA-GCTTTTAACGACTCTATGAATAAGGACGTACC 136
Query 18163 TGTAGAAGA---TaaaaaaaaaGTGACGAAAGCGAAAAAGTAGACTTTTACAAAGACGTT 18219
||||| || ||||||||||| ||| | || || |||| ||| | || ||
Sbjct 137 AGTAGATGACAGCAAAAAAAAAGT---GAATCCAAAGAAATAGATTTTAAAGCGGATGTA 193
Query 18220 ATTTCATTTGCTTTAGGCGAACTTGAAATTAGTAAATTAAGTGATGTTTATGACATGACG 18279
|| | ||||||| |||||||||| |||| ||||||||||||||||| |||||
Sbjct 194 ATCGCTTTTGCTTGTGGCGAACTTGGAATTTTGCGTTTAAGTGATGTTTATGATATGACT 253
Query 18280 TTTGCTGAATTCCAAGTTCGCCTTTTTGCATATAAAAG 18317
|| || || |||||| ||||||||||||| ||||||||
Sbjct 254 TTCGCGGAGTTCCAAATTCGCCTTTTTGCGTATAAAAG 291
>seq81957
Length=235
Score = 109 bits (120), Expect = 1e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 17026 ACTAAATGTAACCCTGGTACTATTGAAAAGCAAGGTGGTACTTTTACATACATGATTGAT 17085
|| |||||||||| ||| || | ||| |||||||| | || | |||| | ||
Sbjct 230 ACAAAATGTAACCATGGAGTTACTAAAATTCAAGGTGGAATTTACTCTTACACTTTAGAC 171
Query 17086 GCAGAAGGTGAATACATAGACACTACTTCAGTAGGTGGTGATTTAGCTAAAGCTTCACAT 17145
|| ||||| || || || || || |||||||||||||| || | | | |||| || ||
Sbjct 170 GCTGAAGGAGAGTATATTGATACAACTTCAGTAGGTGGAGACTCAACAAAAGTATCTCAC 111
Query 17146 GATTTTCTATTTCAAAAACAACAGTTAAAAACTTTAGTTACTTGGAAACTAGTGACAGGT 17205
||||| || || || ||||| |||| ||||||| ||||||||| |||| |||||
Sbjct 110 GATTTCTTAGTTGAATTACAACTTGAAAAAGCTTTAGTAACTTGGAAATTAGTTACAGGA 51
Query 17206 GTAACAGGTCAGATTTACTACGGTTCAGCTTTAAT 17240
|| | || | |||||||||| ||||||||
Sbjct 50 GTTTCTGGAGCAACTTACTACGGTAGTGCTTTAAT 16
>seq256562
Length=480
Score = 80.6 bits (88), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 18398 TACCTAAGACTATAGAGAAGTTTATGCCTTTAGGTGGTTCTAATAGCGCTAATAAAGGTG 18457
||||||| || ||||| | ||||||| |||||| | |||| | || ||||| |
Sbjct 478 TACCTAAAACAATAGATAGGTTTATGAGTTTAGGAGTAAACAATA---CAAAAAAAGGAG 422
Query 18458 TTAGCGAAGAGCAAAAACAAAACTATTTGAATGAGTATAAAGAATATTTAAAAAAGATAA 18517
|||| |||||||| |||||| ||| || | || |||||||||||||| | | |
Sbjct 421 TTAGTACTGAGCAAAAGGAAAACTTTTTAAAAGCATACAAAGAATATTTAAACCAAAAGA 362
Query 18518 ATAATGGCTAAATTAGAAGT 18537
| ||||||||| ||| ||||
Sbjct 361 AAAATGGCTAATTTACAAGT 342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114751496117264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |