Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_006356.2 Length=36012 Score E Sequences producing significant alignments: (Bits) Value seq541 324 3e-84 seq155643 165 2e-36 seq180879 143 6e-30 seq81957 109 1e-19 seq256562 80.6 6e-11 >seq541 Length=763 Score = 324 bits (358), Expect = 3e-84 Identities = 530/756 (70%), Gaps = 22/756 (3%) Strand=Plus/Plus Query 9713 GAATATAAGTTAAGAGAATATTCTTTTCTATCATCTTGGGCTGCTAATGAACTTAGCACG 9772 || || || |||| || ||||| ||| | ||| ||||| || || ||| | || || Sbjct 9 GAGTACAAATTAATGGAGTATTCATTTTTGTCAAGTTGGGGAGCAAACGAATTAAGTACT 68 Query 9773 GTACAAGGAATGAAAAGTATTAAATCTACTTATGGAATATTAGAATTAATTGAAAAATCA 9832 ||||||||| | ||||| || ||| ||| || || | ||||||||||| ||| | Sbjct 69 GTACAAGGACTTAAAAGCATCAAAAGCCATTACGGTATTATGGAATTAATTGAGAAAGCT 128 Query 9833 TACAATTTGGATTATTCAGACGAGAGATTGAAACAAATTGAAACATTATTAAAAGCACTT 9892 || || || |||||| || | ||||| | | | || ||| |||||||||| ||||| Sbjct 129 TATAACTTAGATTATAGCGATCAAAGATTAAGAAATATCGAAGAATTATTAAAATCACTT 188 Query 9893 ACAGATAAGCCGTTAGAACCTAACACTTT-AATGATTGAGCCGCTAGCATTAGATT-ACT 9950 | ||| ||||| |||| | |||||| || || |||||| | ||| || ||| Sbjct 189 TCGGATGAGCCGGCAGAAATTGTCACTTTGAACGAG-GAGCCGATTATATTGAATACACT 247 Query 9951 TAAAGAATTTTAAATTTTAACACAAACACACAAAAATGGAAGCATTAGAAATTAAAGTAG 10010 |||| ||||||| | ||||| | ||||| | | |||||||||||||||||||||||| | Sbjct 248 TAAA-AATTTTACACTTTAAAAAAAACAAA-ACAAATGGAAGCATTAGAAATTAAAGCTG 305 Query 10011 CTTTAGAAGCTATTAAAGGACAAGTAGATAGTAAATCATCTGCACAGGCATTAGAGGTGA 10070 |||| |||| || |||| |||||| || | ||| | ||| || || | ||||| | Sbjct 306 CTTTGGAAGGAATCAAAGCACAAGTTGAAACAAAAACTGCTGAGCAATCAGTTGAGGTTA 365 Query 10071 AAGGATTGATTGAAGCACTAGAGGCTAAAATGACATCTGAAAAGGATTTAGCAGTAAATG 10130 | || || |||||| ||||||| |||||| ||| |||| | | |||| | Sbjct 366 AGTCTTTAATCGAAGCATTAGAGGCAAAAATGGAATCAAAAAACAACGAATCAGTTGTAG 425 Query 10131 AGTTGAAGTCAGATATGGCAGCATTACAAGCTCATGCTGATAAATTAGACGTAAAATTGA 10190 ||||| | || || | || | |||| ||| ||||| |||||||| ||||| Sbjct 426 CATTGAAAGCTGAATTGAAATCAATTCAAGATCACGCTGACTTGTTAGACGTTAAATTAC 485 Query 10191 AAGAGAAAGCTAAATCTGAAGATAAGAGTGA-------TTC------ATTAGTAAAATCT 10237 |||||||| ||| |||| | |||| ||| ||| || | ||||| | Sbjct 486 AAGAGAAA---AAAGCTGAGGCTAAGTCTGAAGGATATTTCGACGTAATGACTAAAACAT 542 Query 10238 ATTACTGAAAACTTTAATGATATTAAAGAAGTAAGAAACGGTAAATCTATTCAAGTTAAG 10297 || |||||||||||||| || ||||||||||||| ||| |||||| | ||||| || Sbjct 543 TAAAC-GAAAACTTTAATGACATCAAAGAAGTAAGAAGCGGAAAATCTGTACAAGTGAAA 601 Query 10298 GCTGTAGGTGATATGACATTGCCAGTTAACTTAACAGGCGCACAACCTAAGGACTATAAC 10357 ||||| || |||||||| ||| | | |||| ||||||| || ||||| || || |||||| Sbjct 602 GCTGTTGGAGATATGACTTTGTCTGGTAACCTAACAGGTGCTCAACCAAAAGATTATAAC 661 Query 10358 TTTGATGTGGTATTGAATCCATCTCAAATGCTTAACGTTTCTGATATCGTAGGGGCTGTA 10417 || || ||| ||| ||| |||| | | |||||| |||| | ||||| |||| Sbjct 662 TTCAATACTGTAATGATCCCAGGTCAATTAGTAAACGTTGCTGACTTAGTAGGTTCTGTT 721 Query 10418 TCTATCTCAGGTGGTACATATACTTTCGTAAGAGAA 10453 || || || ||||| ||||| ||| ||||||| Sbjct 722 AACATTTCTGGAGGTACTTATACATTCCCAAGAGAA 757 >seq155643 Length=347 Score = 165 bits (182), Expect = 2e-36 Identities = 246/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 10688 GCTACAGCATCTACTGAAATTATTACAAATAAGAATAAAGTAGAAATGTTGATTAATGAA 10747 || || ||||||||| ||| |||| | || || ||| | ||||||||||||||||| Sbjct 3 GCAACTGCATCTACTCAAACTATTGATGACAAAAACAAAATCGAAATGTTGATTAATGAG 62 Query 10748 ATTGCTAAGCAAGAAAACCTAGACTTTCCTGTTACAGCTATCGTTTTGAGACCTACAGAC 10807 |||||| ||||||| | ||||| |||| | | |||||||| | ||| | ||| Sbjct 63 GTTGCTACATTAGAAAACTCAAACTTTGCTGTAAACGGAATCGTTTTTCGTCCTTCTGAC 122 Query 10808 TACTATGACATTTTAGTTACTCAAAAGTCAGTAGGTGCAGGATATGGTTTACCAGGTGTG 10867 | ||| || ||| | ||| ||| |||| | | | ||||| || | || || | Sbjct 123 TTCTACGATATTATGAAAACTGCAAAATCAGCATCTTCTGGATACGGACTTCCTGGAATC 182 Query 10868 GTAACACAAGATAACGGTGTACTAAGGATTAACGGAATTCCATTGTTTAGG--GCTACAT 10925 | || | || |||||| |||| || |||||||| | |||||| ||||||| Sbjct 183 GCTACTTACGACGGTGGTGTATTAAGAATCAACGGAATCGC--TGTTTACAAAGCTACAT 240 Query 10926 GGTTAGCAGCTAACAAATACTACGTAGGAGATTGGACTAGAGTTACAAAAGTAACTACTG 10985 |||| || ||||||||||| | || ||||| ||| | ||||||| |||||| |||| Sbjct 241 GGTTGGCTGCTAACAAATATTTTGTTGGAGACTGGTCAAGAGTTAACAAAGTAGTTACTC 300 Query 10986 AGGGTCTTTCGTTAGAGTTTTCTGAAGTAGAAGGAACTAACTTTGTG 11032 | ||| | || |||||||| ||||| |||||| |||||||| ||| Sbjct 301 AAGGTTTATCTTTAGAGTTCTCTGAGCAAGAAGGTACTAACTTCGTG 347 >seq180879 Length=293 Score = 143 bits (158), Expect = 6e-30 Identities = 201/278 (72%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 18044 GAAATAAATTTCACTATCCATGATATTTATGATTTGATAGGAGATAACGGTGGTTTTAAT 18103 ||||| |||| || || |||||| |||||| ||| | || ||||| ||| || Sbjct 18 GAAATTGATTTTACAATGTTCGATATTAATGATTGGATTGATGACAACGGAGGTATTGGC 77 Query 18104 GGTGAGTTTTGCGCTTCTTTT-ACAAATGCTTTTAACGAATCAATGTTTAAAAACGTACC 18162 || ||||| | |||| ||||| ||||||||||| || ||| ||| ||||||| Sbjct 78 GGAAGCTTTTGGAATGATTTTCACAAA-GCTTTTAACGACTCTATGAATAAGGACGTACC 136 Query 18163 TGTAGAAGA---TaaaaaaaaaGTGACGAAAGCGAAAAAGTAGACTTTTACAAAGACGTT 18219 ||||| || ||||||||||| ||| | || || |||| ||| | || || Sbjct 137 AGTAGATGACAGCAAAAAAAAAGT---GAATCCAAAGAAATAGATTTTAAAGCGGATGTA 193 Query 18220 ATTTCATTTGCTTTAGGCGAACTTGAAATTAGTAAATTAAGTGATGTTTATGACATGACG 18279 || | ||||||| |||||||||| |||| ||||||||||||||||| ||||| Sbjct 194 ATCGCTTTTGCTTGTGGCGAACTTGGAATTTTGCGTTTAAGTGATGTTTATGATATGACT 253 Query 18280 TTTGCTGAATTCCAAGTTCGCCTTTTTGCATATAAAAG 18317 || || || |||||| ||||||||||||| |||||||| Sbjct 254 TTCGCGGAGTTCCAAATTCGCCTTTTTGCGTATAAAAG 291 >seq81957 Length=235 Score = 109 bits (120), Expect = 1e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 17026 ACTAAATGTAACCCTGGTACTATTGAAAAGCAAGGTGGTACTTTTACATACATGATTGAT 17085 || |||||||||| ||| || | ||| |||||||| | || | |||| | || Sbjct 230 ACAAAATGTAACCATGGAGTTACTAAAATTCAAGGTGGAATTTACTCTTACACTTTAGAC 171 Query 17086 GCAGAAGGTGAATACATAGACACTACTTCAGTAGGTGGTGATTTAGCTAAAGCTTCACAT 17145 || ||||| || || || || || |||||||||||||| || | | | |||| || || Sbjct 170 GCTGAAGGAGAGTATATTGATACAACTTCAGTAGGTGGAGACTCAACAAAAGTATCTCAC 111 Query 17146 GATTTTCTATTTCAAAAACAACAGTTAAAAACTTTAGTTACTTGGAAACTAGTGACAGGT 17205 ||||| || || || ||||| |||| ||||||| ||||||||| |||| ||||| Sbjct 110 GATTTCTTAGTTGAATTACAACTTGAAAAAGCTTTAGTAACTTGGAAATTAGTTACAGGA 51 Query 17206 GTAACAGGTCAGATTTACTACGGTTCAGCTTTAAT 17240 || | || | |||||||||| |||||||| Sbjct 50 GTTTCTGGAGCAACTTACTACGGTAGTGCTTTAAT 16 >seq256562 Length=480 Score = 80.6 bits (88), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 18398 TACCTAAGACTATAGAGAAGTTTATGCCTTTAGGTGGTTCTAATAGCGCTAATAAAGGTG 18457 ||||||| || ||||| | ||||||| |||||| | |||| | || ||||| | Sbjct 478 TACCTAAAACAATAGATAGGTTTATGAGTTTAGGAGTAAACAATA---CAAAAAAAGGAG 422 Query 18458 TTAGCGAAGAGCAAAAACAAAACTATTTGAATGAGTATAAAGAATATTTAAAAAAGATAA 18517 |||| |||||||| |||||| ||| || | || |||||||||||||| | | | Sbjct 421 TTAGTACTGAGCAAAAGGAAAACTTTTTAAAAGCATACAAAGAATATTTAAACCAAAAGA 362 Query 18518 ATAATGGCTAAATTAGAAGT 18537 | ||||||||| ||| |||| Sbjct 361 AAAATGGCTAATTTACAAGT 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114751496117264