Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq200673 168 1e-37 seq208988 129 9e-26 seq168078 120 5e-23 seq122956 102 1e-17 seq259899 98.7 2e-16 >seq200673 Length=6877 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | || || ||||||||||| |||||||||||||| || || Sbjct 3871 CGCCAAGCGTCATCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAGCCTGCCAT 3930 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | ||||| || ||||| || || ||| | || || ||| | || ||||| | Sbjct 3931 CCGTCGGTTAGCTCGCCGAGGTGGTGTTAAACGTATTTCCGGTTTGATTTACGAAGAAAC 3990 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| |||| | ||||| | | ||| |||| ||| || | || ||||| Sbjct 3991 CCGTGGTGTTCTGAAAGTGTTCCTGGAAAACGTGATCCGTGACGCAGTAACGTACACCGA 4050 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| |||| || || | || || ||||| Sbjct 4051 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTATACGCTCTTAAGCGACAAGG 4110 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| ||| ||||| Sbjct 4111 CCGTACTCTGTACGGTTTCGGAGGTTAA 4138 >seq208988 Length=4763 Score = 129 bits (142), Expect = 9e-26 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | ||||||||| | || || | Sbjct 3775 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGCAGACTGGCTCGTAGAGGAGGCG 3716 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || || |||| || |||| |||| || | ||||||||| | Sbjct 3715 TCAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTCTTGG 3656 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || ||| || |||||||| | | |||||||| ||| Sbjct 3655 AGAACGTGATCCGTGACGCAGTCACCTACACTGAGCACGCGAGGAGGAAGACTGTGACCG 3596 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || || || Sbjct 3595 CCATGGATGTTGTTTACGC 3577 >seq168078 Length=11109 Score = 120 bits (132), Expect = 5e-23 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||||| Sbjct 9018 GAGACAACATCCAAGGAATCACTAAGCCTGCGATTCGCAGATTGGCTCGTAGAGGTGGAG 9077 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 9078 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 9137 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| || | || ||||||||||||| | ||||| || || Sbjct 9138 AGAACGTGATTCGTGACGCAGTGACTTACACCGAGCACGCTAGGAGGAAGACGGTGACTG 9197 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| |||| || || Sbjct 9198 CCATGGATGTCGTTTACGC 9216 >seq122956 Length=3694 Score = 102 bits (112), Expect = 1e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| ||||||||||| || || ||||| || || Sbjct 986 GCAAAGAGGCATCGGAAAGTTCTCAGAGACAACATCCAAGGGATTACGAAGCCTGCGATT 927 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || | | || || || |||||| || ||| ||| |||| ||||| | | Sbjct 926 CGTCGTTTAGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTACGAAGAAACT 867 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | ||||| || || ||| ||||||| ||| || | || || ||| Sbjct 866 CGCGGTGTTCTTAAGATTTTTCTGGAGAATGTTATCCGTGACGCCGTTACTTACACGGAG 807 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 || ||| || || ||||| || | |||||| | || ||||| Sbjct 806 CATGCTCGTCGGAAAACTGTGACGGCGATGGATGTTGTTTATGC 763 >seq259899 Length=1778 Score = 98.7 bits (108), Expect = 2e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| | ||||| || | || ||||||| || | || |||| | || Sbjct 1778 TGGTGTTAAACGTATTTCTGGTTTAATTTACGAAGAGACCCGAGGAGTCCTGAAAGTGTT 1719 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | ||| |||| ||| || || || ||||||||||| || | ||||| || Sbjct 1718 CCTGGAAAACGTGATCCGTGACGCCGTCACATACACCGAGCACGCCAAGAGGAAGACCGT 1659 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| |||| || || | ||||| |||||||||| | |||||||| || Sbjct 1658 CACCGCCATGGACGTCGTATACGCTCTCAAACGACAAGGCCGTACTCTGTATGGTTTCGG 1599 Query 16693 AAGTTAA 16699 | ||||| Sbjct 1598 AGGTTAA 1592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78830871569004