Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq200673 168 1e-37
seq208988 129 9e-26
seq168078 120 5e-23
seq122956 102 1e-17
seq259899 98.7 2e-16
>seq200673
Length=6877
Score = 168 bits (186), Expect = 1e-37
Identities = 198/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | | || || ||||||||||| |||||||||||||| || ||
Sbjct 3871 CGCCAAGCGTCATCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAGCCTGCCAT 3930
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| | ||||| || ||||| || || ||| | || || ||| | || ||||| |
Sbjct 3931 CCGTCGGTTAGCTCGCCGAGGTGGTGTTAAACGTATTTCCGGTTTGATTTACGAAGAAAC 3990
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| |||| |||| | ||||| | | ||| |||| ||| || | || |||||
Sbjct 3991 CCGTGGTGTTCTGAAAGTGTTCCTGGAAAACGTGATCCGTGACGCAGTAACGTACACCGA 4050
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| ||||||| |||| || || | || || |||||
Sbjct 4051 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTATACGCTCTTAAGCGACAAGG 4110
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||| | || ||||| ||| |||||
Sbjct 4111 CCGTACTCTGTACGGTTTCGGAGGTTAA 4138
>seq208988
Length=4763
Score = 129 bits (142), Expect = 9e-26
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || || | ||||||||| | || || |
Sbjct 3775 GAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGCAGACTGGCTCGTAGAGGAGGCG 3716
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || || || |||| || |||| |||| || | ||||||||| |
Sbjct 3715 TCAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTCTTGG 3656
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| |||| ||| || || ||| || |||||||| | | |||||||| |||
Sbjct 3655 AGAACGTGATCCGTGACGCAGTCACCTACACTGAGCACGCGAGGAGGAAGACTGTGACCG 3596
Query 16638 CCATGGATATCGTCTATGC 16656
|||||||| | || || ||
Sbjct 3595 CCATGGATGTTGTTTACGC 3577
>seq168078
Length=11109
Score = 120 bits (132), Expect = 5e-23
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||| ||||| || || || | |||||||| | |||||||
Sbjct 9018 GAGACAACATCCAAGGAATCACTAAGCCTGCGATTCGCAGATTGGCTCGTAGAGGTGGAG 9077
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||| || |||| |||| || | |||||||| |
Sbjct 9078 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 9137
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||| || | || ||||||||||||| | ||||| || ||
Sbjct 9138 AGAACGTGATTCGTGACGCAGTGACTTACACCGAGCACGCTAGGAGGAAGACGGTGACTG 9197
Query 16638 CCATGGATATCGTCTATGC 16656
|||||||| |||| || ||
Sbjct 9198 CCATGGATGTCGTTTACGC 9216
>seq122956
Length=3694
Score = 102 bits (112), Expect = 1e-17
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||| | | ||| |||| ||||||||||| || || ||||| || ||
Sbjct 986 GCAAAGAGGCATCGGAAAGTTCTCAGAGACAACATCCAAGGGATTACGAAGCCTGCGATT 927
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| | || | | || || || |||||| || ||| ||| |||| ||||| | |
Sbjct 926 CGTCGTTTAGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTACGAAGAAACT 867
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | |||| | ||||| || || ||| ||||||| ||| || | || || |||
Sbjct 866 CGCGGTGTTCTTAAGATTTTTCTGGAGAATGTTATCCGTGACGCCGTTACTTACACGGAG 807
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|| ||| || || ||||| || | |||||| | || |||||
Sbjct 806 CATGCTCGTCGGAAAACTGTGACGGCGATGGATGTTGTTTATGC 763
>seq259899
Length=1778
Score = 98.7 bits (108), Expect = 2e-16
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || || ||| | ||||| || | || ||||||| || | || |||| | ||
Sbjct 1778 TGGTGTTAAACGTATTTCTGGTTTAATTTACGAAGAGACCCGAGGAGTCCTGAAAGTGTT 1719
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| | | ||| |||| ||| || || || ||||||||||| || | ||||| ||
Sbjct 1718 CCTGGAAAACGTGATCCGTGACGCCGTCACATACACCGAGCACGCCAAGAGGAAGACCGT 1659
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|||| ||||||| |||| || || | ||||| |||||||||| | |||||||| ||
Sbjct 1658 CACCGCCATGGACGTCGTATACGCTCTCAAACGACAAGGCCGTACTCTGTATGGTTTCGG 1599
Query 16693 AAGTTAA 16699
| |||||
Sbjct 1598 AGGTTAA 1592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78830871569004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |