Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_006657.1
Length=19820
Score E
Sequences producing significant alignments: (Bits) Value
seq167653 104 3e-18
seq4524 80.6 3e-11
>seq167653
Length=811
Score = 104 bits (114), Expect = 3e-18
Identities = 131/174 (75%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 12476 TTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTA 12535
|| |||| | | ||||||| | ||| ||||| |||||||||||||||||||||||||||
Sbjct 39 TTAAATTCTGTTCGAAATAGATATAATTTTAAAGTATATATGGCTTTTGCCATCCACCTT 98
Query 12536 GCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACT-TAACTGCAGGGAACTTTACCA-- 12592
|| ||| ||||||| ||||| | |||||| | | | ||| | || || ||||
Sbjct 99 GCCATGTGATATGCACCAGGTTTCCTAAATTTGATTCCACCTGGA-GGTACACCACCAAG 157
Query 12593 ATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGATTT 12646
||||||| || |||| |||||||| || ||||| ||||| | ||| | |||
Sbjct 158 ATAAATAATTG-ACAA-ATCCAAAAGCTCGCGGTAATCTTCACGGGGTAGTTTT 209
>seq4524
Length=573
Score = 80.6 bits (88), Expect = 3e-11
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 12479 AATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTAGCG 12538
||||| |||||||| | ||||||||||| | |||||| || || ||||||||||||||
Sbjct 1 AATTGATTACGAAAAATAAATATTTTTAGACAATATATTGCCTTGGCCATCCACCTAGCA 60
Query 12539 TGGTGGAATGCACCCGGTTTTCGAAAT 12565
|| ||| | ||||| || | ||||||
Sbjct 61 TGATGGGAAGCACCTGGAATACGAAAT 87
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 63109996853612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |