Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq167653 104 3e-18 seq4524 80.6 3e-11 >seq167653 Length=811 Score = 104 bits (114), Expect = 3e-18 Identities = 131/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 12476 TTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTA 12535 || |||| | | ||||||| | ||| ||||| ||||||||||||||||||||||||||| Sbjct 39 TTAAATTCTGTTCGAAATAGATATAATTTTAAAGTATATATGGCTTTTGCCATCCACCTT 98 Query 12536 GCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACT-TAACTGCAGGGAACTTTACCA-- 12592 || ||| ||||||| ||||| | |||||| | | | ||| | || || |||| Sbjct 99 GCCATGTGATATGCACCAGGTTTCCTAAATTTGATTCCACCTGGA-GGTACACCACCAAG 157 Query 12593 ATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGATTT 12646 ||||||| || |||| |||||||| || ||||| ||||| | ||| | ||| Sbjct 158 ATAAATAATTG-ACAA-ATCCAAAAGCTCGCGGTAATCTTCACGGGGTAGTTTT 209 >seq4524 Length=573 Score = 80.6 bits (88), Expect = 3e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 12479 AATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTAGCG 12538 ||||| |||||||| | ||||||||||| | |||||| || || |||||||||||||| Sbjct 1 AATTGATTACGAAAAATAAATATTTTTAGACAATATATTGCCTTGGCCATCCACCTAGCA 60 Query 12539 TGGTGGAATGCACCCGGTTTTCGAAAT 12565 || ||| | ||||| || | |||||| Sbjct 61 TGATGGGAAGCACCTGGAATACGAAAT 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63109996853612