Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq57019 89.7 1e-13 seq56355 80.6 5e-11 >seq57019 Length=304 Score = 89.7 bits (98), Expect = 1e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 6165 TATAACTCCAGCCTCCCTAAGCTCTTCAATAATTGACATGATTTCATTCGTGTGACTTGG 6224 ||| ||||||||||| | |||||||| | ||| || || ||||| || | ||||| Sbjct 157 TATTACTCCAGCCTCACGCAGCTCTTCGAAAATCGATATAATTTCGTTTGAAACACTTGT 98 Query 6225 GTTTCCAGCAGCTTGAGATGCCATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATC 6284 || ||||| || | || || || ||||| || || ||||| ||||| ||||| ||||| Sbjct 97 ATTACCAGCTGCCTTTGACGCTATAAGTAGACGTAATCGATCGACTAGTTCATTCGGATC 38 Query 6285 ATCCCAGTAAAC 6296 |||||||| || Sbjct 37 GTCCCAGTACAC 26 >seq56355 Length=4255 Score = 80.6 bits (88), Expect = 5e-11 Identities = 118/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 7923 GTGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAG 7982 |||| | |||| |||| |||| |||| || | || || | ||| | || | || | Sbjct 3044 GTGGCACAGGTCTGTTGAACACCGTAATAAATAGTCTACCGATCGAATTGCATCTGCCCG 3103 Query 7983 GTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAG 8042 |||||||||| ||||| ||||| || || ||||| || ||| | || | || | | | Sbjct 3104 GTTATCAGTATTGCGGCCCGGGGACTAATTTAGCAAAAAGACTCGCGCTCGGACAGCCCG 3163 Query 8043 GTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTAC 8089 | ||||| ||||||| | ||||| | || ||||||||||| ||| Sbjct 3164 GAATAAACGGTTTGGACTCGGCGTGCAGAGATCACGATATAGCGTAC 3210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97663494652312