Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 609 3e-169
seq218717 156 5e-33
seq249645 109 7e-19
seq244327 82.4 1e-10
>seq28607
Length=83266
Score = 609 bits (674), Expect = 3e-169
Identities = 712/957 (74%), Gaps = 6/957 (1%)
Strand=Plus/Minus
Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433
||||| | ||| | |||||||| || || || || || | || |||||||| ||
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492
||||| ||||| ||| | | | || || | |||||| | || ||||| ||||| ||
Sbjct 1442 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384
Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552
||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| ||
Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324
Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610
|| || || ||||| |||| ||| || ||| || || || | || || || ||
Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 1266
Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670
|||||||||||||| || ||||||| |||||||| || || ||||||||| ||||| |
Sbjct 1265 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1206
Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730
|| | ||||| | | ||||| | ||| |||||||| ||||||||||| || |
Sbjct 1205 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1146
Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790
|| ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||| |||
Sbjct 1145 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 1086
Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850
||||||||| || ||||||| |||| ||||| ||| |||||||||||| || ||
Sbjct 1085 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1026
Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910
|| ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| |||||
Sbjct 1025 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 966
Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970
|| || |||||||| || || ||||| || ||||| || || || || ||||||||||
Sbjct 965 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 906
Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030
|| || | || || |||||| | | | || || || || ||||| || |
Sbjct 905 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 846
Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090
|||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 845 GGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 786
Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150
|| || |||||||||||||||| |||||||| |||||||| |||| || ||| |
Sbjct 785 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 726
Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210
|| |||||||| || || ||||| |||||| |||| | || | || ||||| |||
Sbjct 725 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTC 666
Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270
||||| ||||| ||||| |||||||| || | || | | |||| ||||| | ||
Sbjct 665 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 606
Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327
|| ||||| ||| | | || |||||| || |||||||| || ||||| || |||
Sbjct 605 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 549
Score = 589 bits (652), Expect = 3e-163
Identities = 742/1012 (73%), Gaps = 18/1012 (2%)
Strand=Plus/Plus
Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934
||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || |
Sbjct 32414 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32473
Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994
|||| ||| ||||| || | || || ||| | || || ||||| ||||| || |
Sbjct 32474 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32533
Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051
|||| || || || ||||| ||||| || | ||||| ||||| | || || |
Sbjct 32534 GGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 32590
Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111
| ||||||||||||||| || | | | |||||| | | |||| |||||||||||
Sbjct 32591 CCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAG 32650
Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171
| ||||||||| | || |||| ||| | || || || ||| ||||||| || ||||
Sbjct 32651 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCC 32710
Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230
|||| || || | || || || ||| | || || ||||| | |||| || | |
Sbjct 32711 ACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTT- 32769
Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288
|| | || || || || |||||||||||||||||||| || ||||| || || |
Sbjct 32770 --CAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 32827
Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348
| ||||| || ||||| |||||||||| ||||||||||||| || |||||||| |
Sbjct 32828 TCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 32887
Query 138349 CAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACC 138405
| || || || |||| |||| || |||| ||||||| ||||| ||||| | ||||
Sbjct 32888 CGGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACC 32944
Query 138406 CCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATG 138465
| |||||||||||||| || || ||| | || || | |||||||| || ||||||||||
Sbjct 32945 CATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATG 33004
Query 138466 GTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCAT 138525
||||||| |||||||||||||| | ||||||||| || ||||||| || || |
Sbjct 33005 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTT 33064
Query 138526 TTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGC 138585
|| | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |
Sbjct 33065 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCAC 33124
Query 138586 AAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTC 138645
|||||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| |
Sbjct 33125 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 33184
Query 138646 CCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAG 138705
| || | ||| | |||| ||| | |||| | | || || ||| | |||||||| |
Sbjct 33185 CGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTG 33244
Query 138706 CGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765
| ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 33245 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCT 33304
Query 138766 ACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAAC 138825
| || || || |||||| | || |||||| | ||||| |||||||| || ||||| |
Sbjct 33305 ATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGC 33364
Query 138826 CTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877
|||| |||||| || | || ||||| || || | ||| | || ||||||||
Sbjct 33365 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416
>seq218717
Length=448
Score = 156 bits (172), Expect = 5e-33
Identities = 168/221 (76%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759
||| ||| |||| ||||||||||| || | ||||||||||| ||||||||| |||
Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168
Query 135760 CGCTTACTCAGCCCCTGTT-GCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGAC 135818
|| || ||||| |||||| || ||||||| || ||||||| || | || || |||| |
Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108
Query 135819 AAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTG 135878
|||| ||| | |||||||||| || || || ||| | ||||| |||| || |||
Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48
Query 135879 TTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCAC 135919
| |||||||| || ||||||||||| ||||| || || |||
Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq249645
Length=476466
Score = 109 bits (120), Expect = 7e-19
Identities = 204/296 (69%), Gaps = 9/296 (3%)
Strand=Plus/Plus
Query 114520 CTAGAAGGTATTCGTTTTTATGTATCATTTGCATGTTCATTTGCATTTGGTGAGAATAAA 114579
||||||| |||||||| ||||| || ||||| || || ||||| |||| |||| |||
Sbjct 268794 CTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAA 268853
Query 114580 TTGATGGAAGGTAATGCGAAAATTATTTCTCTCATTGCAAGAGATGAATCTCAGCACATG 114639
||||||||||||||||| ||||| ||| ||||| || | |||||| | | ||| ||
Sbjct 268854 TTGATGGAAGGTAATGCCAAAATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTG 268913
Query 114640 ACTATTACTCAAAATATTATTAA---TAAGTGGAAGGCTGGCGATGATCCAGACATGGTT 114696
|| ||| || |||| | || | | | || | | | || ||||| || |||||
Sbjct 268914 ACAGGTACGCAGCATATGCTAAACCTCATGCGCAACGGTCGTGACGATCCTGAGATGGTC 268973
Query 114697 GAAAT---CGCAAAGCAAGAAGAGAATAATGTTTATGATATGTTTAAAAAATGTGTTGAA 114753
|| || |||| || | || || || | ||| || || ||| || |||
Sbjct 268974 GAGATTGCCGCAGAG--TGTTTCGATGAAAGTAT-TGAAATCTTCCGCAAAGCTGCTGAG 269030
Query 114754 GAAGAGATTATCTGGGCAGATTACCTGTTCCGAGATGGATCGATGATTGGTCTCAA 114809
|||| | ||||||| || |||||| |||||| |||||||||||||| ||
Sbjct 269031 CAAGAAAAAGAATGGGCAGGCTATCTGTTCAAAGATGGCTCGATGATTGGTCTAAA 269086
>seq244327
Length=1302
Score = 82.4 bits (90), Expect = 1e-10
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 114510 TGTTTATATTCTAGAAGGTATTCGTTTTTATGTATCATTTGCATGTTCATTTGCATTTGG 114569
|||| || | |||||| ||| | |||||||| |||||||||||||| || ||||
Sbjct 626 TGTTAATGTATTAGAAGCAATTAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTTGC 567
Query 114570 TGAGAATAAATTGATGGAAGGTAATGCGAAAATTATTTCTCTCATTGCAAGAGATGAA 114627
|| | |||| |||||||||||||| |||||||| | || ||||||||||||
Sbjct 566 AGAAAGAGAATTAATGGAAGGTAATGCAAAAATTATAAGATTAATAGCAAGAGATGAA 509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 625870367091200
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