Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq28607 609 3e-169 seq218717 156 5e-33 seq249645 109 7e-19 seq244327 82.4 1e-10 >seq28607 Length=83266 Score = 609 bits (674), Expect = 3e-169 Identities = 712/957 (74%), Gaps = 6/957 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || || || || || | || |||||||| || Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || ||||| ||||| || Sbjct 1442 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| || Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || || ||||| |||| ||| || ||| || || || | || || || || Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 1266 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 |||||||||||||| || ||||||| |||||||| || || ||||||||| ||||| | Sbjct 1265 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1206 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | ||||| | | ||||| | ||| |||||||| ||||||||||| || | Sbjct 1205 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1146 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||| ||| Sbjct 1145 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 1086 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||||||||| || ||||||| |||| ||||| ||| |||||||||||| || || Sbjct 1085 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1026 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| ||||| Sbjct 1025 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 966 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || || |||||||| || || ||||| || ||||| || || || || |||||||||| Sbjct 965 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 906 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || || | || || |||||| | | | || || || || ||||| || | Sbjct 905 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 846 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 |||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| || Sbjct 845 GGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 786 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || |||||||||||||||| |||||||| |||||||| |||| || ||| | Sbjct 785 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 726 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 || |||||||| || || ||||| |||||| |||| | || | || ||||| ||| Sbjct 725 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTC 666 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 ||||| ||||| ||||| |||||||| || | || | | |||| ||||| | || Sbjct 665 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 606 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 605 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 549 Score = 589 bits (652), Expect = 3e-163 Identities = 742/1012 (73%), Gaps = 18/1012 (2%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || | Sbjct 32414 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32473 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 32474 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32533 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| || || || ||||| ||||| || | ||||| ||||| | || || | Sbjct 32534 GGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 32590 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||||||||||||| || | | | |||||| | | |||| ||||||||||| Sbjct 32591 CCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAG 32650 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||||||| | || |||| ||| | || || || ||| ||||||| || |||| Sbjct 32651 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCC 32710 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230 |||| || || | || || || ||| | || || ||||| | |||| || | | Sbjct 32711 ACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTT- 32769 Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288 || | || || || || |||||||||||||||||||| || ||||| || || | Sbjct 32770 --CAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 32827 Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348 | ||||| || ||||| |||||||||| ||||||||||||| || |||||||| | Sbjct 32828 TCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 32887 Query 138349 CAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACC 138405 | || || || |||| |||| || |||| ||||||| ||||| ||||| | |||| Sbjct 32888 CGGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACC 32944 Query 138406 CCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATG 138465 | |||||||||||||| || || ||| | || || | |||||||| || |||||||||| Sbjct 32945 CATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATG 33004 Query 138466 GTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCAT 138525 ||||||| |||||||||||||| | ||||||||| || ||||||| || || | Sbjct 33005 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTT 33064 Query 138526 TTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGC 138585 || | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| | Sbjct 33065 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCAC 33124 Query 138586 AAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTC 138645 |||||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| | Sbjct 33125 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 33184 Query 138646 CCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAG 138705 | || | ||| | |||| ||| | |||| | | || || ||| | |||||||| | Sbjct 33185 CGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTG 33244 Query 138706 CGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765 | ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| |||| Sbjct 33245 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCT 33304 Query 138766 ACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAAC 138825 | || || || |||||| | || |||||| | ||||| |||||||| || ||||| | Sbjct 33305 ATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGC 33364 Query 138826 CTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 |||| |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 33365 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416 >seq218717 Length=448 Score = 156 bits (172), Expect = 5e-33 Identities = 168/221 (76%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 ||| ||| |||| ||||||||||| || | ||||||||||| ||||||||| ||| Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168 Query 135760 CGCTTACTCAGCCCCTGTT-GCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGAC 135818 || || ||||| |||||| || ||||||| || ||||||| || | || || |||| | Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108 Query 135819 AAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTG 135878 |||| ||| | |||||||||| || || || ||| | ||||| |||| || ||| Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48 Query 135879 TTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCAC 135919 | |||||||| || ||||||||||| ||||| || || ||| Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 >seq249645 Length=476466 Score = 109 bits (120), Expect = 7e-19 Identities = 204/296 (69%), Gaps = 9/296 (3%) Strand=Plus/Plus Query 114520 CTAGAAGGTATTCGTTTTTATGTATCATTTGCATGTTCATTTGCATTTGGTGAGAATAAA 114579 ||||||| |||||||| ||||| || ||||| || || ||||| |||| |||| ||| Sbjct 268794 CTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAA 268853 Query 114580 TTGATGGAAGGTAATGCGAAAATTATTTCTCTCATTGCAAGAGATGAATCTCAGCACATG 114639 ||||||||||||||||| ||||| ||| ||||| || | |||||| | | ||| || Sbjct 268854 TTGATGGAAGGTAATGCCAAAATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTG 268913 Query 114640 ACTATTACTCAAAATATTATTAA---TAAGTGGAAGGCTGGCGATGATCCAGACATGGTT 114696 || ||| || |||| | || | | | || | | | || ||||| || ||||| Sbjct 268914 ACAGGTACGCAGCATATGCTAAACCTCATGCGCAACGGTCGTGACGATCCTGAGATGGTC 268973 Query 114697 GAAAT---CGCAAAGCAAGAAGAGAATAATGTTTATGATATGTTTAAAAAATGTGTTGAA 114753 || || |||| || | || || || | ||| || || ||| || ||| Sbjct 268974 GAGATTGCCGCAGAG--TGTTTCGATGAAAGTAT-TGAAATCTTCCGCAAAGCTGCTGAG 269030 Query 114754 GAAGAGATTATCTGGGCAGATTACCTGTTCCGAGATGGATCGATGATTGGTCTCAA 114809 |||| | ||||||| || |||||| |||||| |||||||||||||| || Sbjct 269031 CAAGAAAAAGAATGGGCAGGCTATCTGTTCAAAGATGGCTCGATGATTGGTCTAAA 269086 >seq244327 Length=1302 Score = 82.4 bits (90), Expect = 1e-10 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 114510 TGTTTATATTCTAGAAGGTATTCGTTTTTATGTATCATTTGCATGTTCATTTGCATTTGG 114569 |||| || | |||||| ||| | |||||||| |||||||||||||| || |||| Sbjct 626 TGTTAATGTATTAGAAGCAATTAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTTGC 567 Query 114570 TGAGAATAAATTGATGGAAGGTAATGCGAAAATTATTTCTCTCATTGCAAGAGATGAA 114627 || | |||| |||||||||||||| |||||||| | || |||||||||||| Sbjct 566 AGAAAGAGAATTAATGGAAGGTAATGCAAAAATTATAAGATTAATAGCAAGAGATGAA 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625870367091200