Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 563 2e-156
seq218717 134 4e-27
>seq28607
Length=83266
Score = 563 bits (624), Expect = 2e-156
Identities = 725/995 (73%), Gaps = 4/995 (0%)
Strand=Plus/Minus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || || || || || || ||||| | || |||||||| || |
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||| ||| |||| | | || ||| | ||||| |||| || || || || ||
Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|||||||| || || | |||| | || || || || |||| ||||| ||||||
Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263
Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589
|||||||| | | | ||||| ||| |||||||||||||||| ||| |||| ||||
Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203
Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649
| ||||| ||| | || ||||| || ||| | |||||||||| || | |
Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143
Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709
| || ||| | || ||||| || |||||| |||| || | |||| || ||||
Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083
Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768
|| ||||| | | |||||| |||| ||||| |||||| ||||||||||||||| || ||
Sbjct 1082 GT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1024
Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828
|||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| ||
Sbjct 1023 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 964
Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888
|| |||||| | ||||| ||||| |||||||| || || || || ||||||||| ||
Sbjct 963 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 904
Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948
||||| ||||| | |||| |||||| || || ||| ||| || | ||
Sbjct 903 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844
Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008
|| || ||||| ||||| ||||| || || || ||||| ||||| || || || |||||
Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784
Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068
||||||| || ||||||||| |||||| ||||||||||||||||||||||| | ||
Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724
Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128
||| || || || || || ||| |||| | | || || |||| |||||||||||
Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664
Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187
||| |||||||| || || ||||| |||||||||||| ||||| ||| | || |
Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 605
Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247
| ||||||||| | | || | |||||||| || | ||||||||||| || || ||||
Sbjct 604 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 545
Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282
|||| |||||||| || || ||||| | | ||||
Sbjct 544 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
>seq218717
Length=448
Score = 134 bits (148), Expect = 4e-27
Identities = 157/208 (75%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689
|||||||||| || | | || ||| | || ||||| | || |||||| |||| |
Sbjct 213 AGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTC 154
Query 19690 CACTAT-CAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAG 19747
| | | |||| ||| ||| ||| ||||| | |||| ||| |||| ||||| ||||||
Sbjct 153 CTGTTTGCAGCTGCTATTGTTGT-TTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTT 95
Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807
| ||||||||||||| || |||||| ||||||| |||||||| | |||||||| || ||
Sbjct 94 TAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAGGCTGA 35
Query 19808 ACACAATATCCTTATGCATCCGTTCCAC 19835
||||| || |||||||| || || |||
Sbjct 34 GCACAACATTCTTATGCACCCATTTCAC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143983238776368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |