Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq28607 513 2e-140 seq235561 132 8e-26 seq218717 129 9e-25 seq180671 98.7 2e-15 seq56932 98.7 2e-15 >seq28607 Length=83266 Score = 513 bits (568), Expect = 2e-140 Identities = 684/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1462 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 1404 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1403 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1344 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 1343 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 1284 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || ||||||||||| ||| | ||||||| ||||| ||||| || Sbjct 1283 GGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 1224 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 1223 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1164 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 1163 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1104 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| || ||||| ||| | | |||||| | ||||| || || || Sbjct 1103 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 1044 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 1043 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 984 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 983 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 924 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 |||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 923 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 864 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | |||||||| ||||||||||||||||| || || ||||| || Sbjct 863 AATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTA 804 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| ||||| || || || || | |||||||| ||||| |||||||| | Sbjct 803 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 744 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | || | ||||| || | || | ||||| || || | ||| Sbjct 743 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 684 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 683 ATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 625 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || |||||||||||||| Sbjct 624 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 565 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 564 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 520 >seq235561 Length=11938 Score = 132 bits (146), Expect = 8e-26 Identities = 230/332 (69%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGC-AAAGTTG 193889 |||||| || ||||| ||||| |||||||| | ||||| || | || | ||||| | Sbjct 10108 CTCCACAATTGGAAACGACACCGTTTCATCCTAGATCTCCGTACGCTGCTTCTAAAGTCG 10049 Query 193890 TATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGT 193949 || | ||||| || |||||| ||||| | ||||| || |||| || ||| Sbjct 10048 C-TGCTCATTGGTACACTGTGAATTACCGTGAAGCTTATGGTTTATTCGCTTGTAATGGG 9990 Query 193950 ATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACA 194009 ||||| ||||| || || || || | ||||||||| || || || | ||||| || Sbjct 9989 ATTCTGTTCAACCATGAGTCACCTCGTCGAGGTGAGAATTTCGTGACGAGAAAGATCACG 9930 Query 194010 CAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAAT 194069 || ||| | |||| || || || |||| || |||| ||||| ||||| | Sbjct 9929 AGAGCTTTGGGAAGGATCAAGGTGGGTTTGCAGAGGAAGCTTTTCCTTGGGAATCTACAA 9870 Query 194070 GCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAA 194129 ||| |||||||||||| ||| ||||||||| || || |||||| | |||||||| Sbjct 9869 GCTTCAAGGGATTGGGGATTTGCAGGGGATTATGTGGAGGCAATGTGGATGATGTTGCAG 9810 Query 194130 CAGGATGAACCCGATGATTATGTGATTGCTAC 194161 || || | || |||||||| || |||| || Sbjct 9809 CAAGAGAAGCCTGATGATTACGTTGTTGCAAC 9778 >seq218717 Length=448 Score = 129 bits (142), Expect = 9e-25 Identities = 153/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | || | ||||||||||||||||| |||||| |||||||| | Sbjct 213 AGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTC 154 Query 211970 CTGTAT-CAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 |||| | |||| ||| | | ||| ||| | |||| ||| | ||||| || || | Sbjct 153 CTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGTTTTTTT 94 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 | ||||||||| |||| || || | || |||||||| || | |||||||| || || Sbjct 93 AATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAGGCTGAG 34 Query 212089 CATAACATCCTTATGCACCCATTCCA 212114 || ||||| |||||||||||||| || Sbjct 33 CACAACATTCTTATGCACCCATTTCA 8 >seq180671 Length=3191 Score = 98.7 bits (108), Expect = 2e-15 Identities = 352/541 (65%), Gaps = 17/541 (3%) Strand=Plus/Minus Query 194557 GAGGTTGATGCATACTTTAAGCAATCGAAACCTGAGTATGTATTTCTTGCTGCTGCTAAG 194616 || ||||| || | |||| ||| |||||| | |||||| | | || || ||||| Sbjct 1846 GATGTTGAAGCTTTCTTTGCTCAAGAGAAACCAGTTTATGTAATCTTAGCAGCAGCTAAA 1787 Query 194617 GTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCCGATTTCATCTATGACAATCTGATG 194676 || ||||| || || |||| || |||||||| ||||||||| || |||||| Sbjct 1786 GTTGGTGGGATTCATGCTAACAACACTTATCCTGCTGATTTCATCGGTGTCAATCTTCAA 1727 Query 194677 ATTCAGACAAATGTTATTGATGCTGCATATCGTAATGGAGTTAAGAAACTATTGTTTCTA 194736 || || || ||||| || | |||| || | || || ||||| ||| | || || Sbjct 1726 ATCCAAACCAATGTGATCCACTCTGCTTACGAGCACGGTGTGAAGAAGCTACTCTTCCTT 1667 Query 194737 GGTTCATCTTGCATCTATCCTAAGTT---TCCAAAGATACCTATTACAGAGGATCAGTTA 194793 || ||||||||||| || || || || ||| || || ||| | ||| | ||| Sbjct 1666 GGATCATCTTGCATTTACCCCAAATTTGCTCCTCAG---CCGATTCCTGAGTCTGCGTTG 1610 Query 194794 CTTGCTAGTCCTTTGGAAGAATCTAA-TAGTGCTTATGCAATTGCAAAGATAGCAGGTAT 194852 | || | || | ||| |||| |||| || || |||| ||||| || || || Sbjct 1609 TTAACTGGACCGCTTGAACCGACTAACGAGTG-GTACGCTGTTGCTAAGATCGCTGGGAT 1551 Query 194853 GAGGATGTGTCAAGCATATCGTCAGCAGTATGGATTTAATGCAATATCATTAATGCCTAC 194912 | || ||||| || || || ||| | |||| |||| || || |||||||| Sbjct 1550 CAAGACTTGTCAGGCTTACCGGATTCAGCACGGATGGGATGCGATCTCTGGGATGCCTAC 1491 Query 194913 TAATCTATACGGACCTAATGATAATTTTGATATTAATAATGGTCATGTATTACCATCACT 194972 |||| | || || |||||||| || || | | ||| ||||| | || | || Sbjct 1490 TAATTTGTATGGCCCTAATGACAACTTCCACCCGCAGAATTCGCATGTGCTTCCTGCTCT 1431 Query 194973 CATCGCTAAGTTCCAC--GGATCACTTGAGAAGAG-TGAGCACTGGGTTGTTAAGTTATG 195029 || | ||| ||| || | ||| ||| |||| | |||||| ||| || Sbjct 1430 TATGAGGAGGTTTCACGAGGCGAAAGTGAATGGAGCTGAGGA---AGTTGTT--GTT-TG 1377 Query 195030 GGGTGATGGATCTCCGAAGAGAGAGTTCCTTCATGTTGATGATCTAGCAGAAGCTTGTGT 195089 |||| ||| |||| ||| |||||| | ||||| |||||| | || || |||||||| Sbjct 1376 GGGTACAGGAAGTCCGTTGAGGGAGTTCTTGCATGTCGATGATTTGGCTGATGCTTGTGT 1317 Query 195090 T 195090 | Sbjct 1316 T 1316 >seq56932 Length=160465 Score = 98.7 bits (108), Expect = 2e-15 Identities = 192/279 (69%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 156782 CTGTAACTAAGGTTTCTGATTATACTGGATCACCAGAGATTCTTAATGGAAGAGTGAAGA 156841 |||| || | || ||||| || || || | || ||||| | |||| | || |||| Sbjct 118856 CTGTCACCGAAGTATCTGACTACACAGGCTTTCCTGAGATGATGGATGGTCGTGTTAAGA 118797 Query 156842 CATTACATCCAAAGATTCATGGTGGTATTCTTGCACAGCGTGGTAATCCTGTACATGATA 156901 | | ||||| || |||||||| || || || | || || |||| | ||||| Sbjct 118796 CCCTGCATCCTAAAATTCATGGCGGCATCCTCGGACGTCGCGGTAC------AGATGATG 118743 Query 156902 -TGGATCGTAATGCAAATGATATTGGATTGATTGATATTGTTGCAGTAAACTTATATCCT 156960 || | | | || ||| || | | ||||| | |||| || || ||||||||| Sbjct 118742 CTGTAATG-AGTGAGCATGCAATCGAACGTATTGACTTGGTTGTGGTGAATTTATATCCT 118684 Query 156961 TTCGCAGAAACAGTTGCTAAACCAGATGTAACTCTTGCA-GATGCAATAGAGAATATTGA 157019 || || ||||| ||||| | |||||||| | || | ||||| || ||||||||||| Sbjct 118683 TTTGCTGAAACCATTGCTCGTGCTGATGTAAC-CATGAACGATGCCATCGAGAATATTGA 118625 Query 157020 TATTGGTGGTCCTAGTATGGTGAGATCAGCAGCAAAGAA 157058 ||| |||||||||| |||||| | ||||| ||||| || Sbjct 118624 TATCGGTGGTCCTACTATGGTACGTTCAGCGGCAAAAAA 118586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804857682987680