Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 551 6e-152
>seq28607
Length=83266
Score = 551 bits (610), Expect = 6e-152
Identities = 726/1001 (73%), Gaps = 4/1001 (0%)
Strand=Plus/Minus
Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725
|| ||| | ||| |||| |||||| ||||| | ||| |||| ||||||||||| ||
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784
|||||||| | ||| | || || || | ||| ||| | |||||||| ||||||||
Sbjct 1442 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384
Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843
|||||| ||||| || || || | ||||| ||| | || ||| ||||| || || ||||
Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 1325
Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903
| || || || ||||| | |||| |||| || || || || || || || || |
Sbjct 1324 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 1265
Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963
|||||||||| || | | || || ||| | |||||||| |||||||| | || ||
Sbjct 1264 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 1205
Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023
|| | ||||| | |||| | || || |||||| | |||||||||| | |
Sbjct 1204 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1145
Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083
| || || ||| | |||||||| ||| ||||| ||||| ||||| | || ||| ||
Sbjct 1144 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTG 1085
Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143
| || ||| | | || ||| | ||||| || || |||||||||||||| ||||| |
Sbjct 1084 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1025
Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203
|||| ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||
Sbjct 1024 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 965
Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263
| || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| |
Sbjct 964 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 905
Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323
|||| | || || ||| | | ||||| || || || || || || | || | |
Sbjct 904 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 845
Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383
| || || |||||||||||||||||||| || |||||||| ||||||||||| || || |
Sbjct 844 GTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 785
Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443
| |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | |
Sbjct 784 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 725
Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503
| | | || ||||| || | ||||| || || | ||||| | || ||||| ||||
Sbjct 724 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCA 665
Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563
|||| || || ||||| |||||||||||||| || ||| | ||| || | |
Sbjct 664 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 605
Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623
| |||| ||| || ||||| | || |||||||| |||||||||||||||||| | ||||
Sbjct 604 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 545
Query 171624 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664
| ||||||||||| ||||||||||| ||| |||| || ||
Sbjct 544 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 504
Score = 369 bits (408), Expect = 4e-97
Identities = 711/1049 (68%), Gaps = 21/1049 (2%)
Strand=Plus/Plus
Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843
||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | |
Sbjct 32393 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 32452
Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903
| ||||||||||| || || || |||||||| || | || | || ||||||||| ||
Sbjct 32453 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAG 32512
Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963
| || || || || || |||||||| || ||||| | || || ||| | || ||
Sbjct 32513 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 32572
Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023
|| |||||||| || || || || || |||| | || | | | ||| | | ||||
Sbjct 32573 GCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 32632
Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083
| || ||||| ||||| |||||||||||| || || |||| ||||||||| || || |
Sbjct 32633 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 32692
Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143
|| ||||| || | || || | || | | | |||||||| ||| | | || ||||
Sbjct 32693 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 32752
Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203
| |||| || ||| | || ||||| || ||| | |||||||| | ||||
Sbjct 32753 AACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 32812
Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263
| || || |||| ||||| |||||| | ||||| | |||||||||| || |
Sbjct 32813 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGC 32872
Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323
|| |||||||| || || || ||||| | || | || | || || || || |||
Sbjct 32873 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 32932
Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383
|| | || ||||||||||||||||| || || ||| |||| || | || | ||||
Sbjct 32933 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTAT 32992
Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443
| || || |||||||| || ||| | || || || | |||||| ||
Sbjct 32993 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 33037
Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503
| | | | ||| |||| ||| | || || | || || || | ||||||||||
Sbjct 33038 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 33091
Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563
|| ||| | || |||||| | || |||||||| || ||||| | || ||||| || |
Sbjct 33092 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 33151
Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623
|| | | ||||| ||| ||||||| || ||||| || | ||| | |||| ||
Sbjct 33152 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 33211
Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683
| || | || || || || | ||||| | || || ||||| || || || || ||
Sbjct 33212 TTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 33271
Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743
| ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || ||||
Sbjct 33272 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 33331
Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803
|||| | || |||||| | || ||||| || ||||| ||| || | ||||| || |
Sbjct 33332 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 33391
Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832
| || | ||||| || ||||| || |||
Sbjct 33392 AGGTTCTACCACGTGGAAACGCTCTTTAA 33420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568363902613920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |