Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq146431 187 3e-42 seq27195 154 2e-32 seq205226 95.1 2e-14 seq100826 89.7 6e-13 >seq146431 Length=15796 Score = 187 bits (206), Expect = 3e-42 Identities = 382/560 (68%), Gaps = 6/560 (1%) Strand=Plus/Plus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||||||| |||||||| ||||| | ||| ||||||| || | |||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || | ||| ||||| || ||||| || |||||||| || || ||| ||| || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTC 33476 |||||||| ||||| || ||| || || | | || || || || | | | | Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-C 4300 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 || ||||| | |||||| | || ||||| |||||||| || ||||| | || Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || |||| | | | || || ||||||| | |||||||||| || |||||||| Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || ||||| || || ||||| || || |||||||||||||| | || |||| Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480 Query 33657 AATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||||| |||| ||| ||||| || | |||||| || ||||||||| | Sbjct 4481 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTC 33774 | || || || || | || ||||| || || | ||| || | ||| || || | | Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || ||| |||| |||| |||||||||||| | ||||| || ||||| || || Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658 Query 33835 TTTTTATACATGTTCCAGAT 33854 || || ||||| | |||||| Sbjct 4659 TTCTTGTACATCTCCCAGAT 4678 >seq27195 Length=13093 Score = 154 bits (170), Expect = 2e-32 Identities = 377/561 (67%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||| || |||||||||||||| | || ||||||| |||| ||||| || || Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || | || ||||| || || || ||||| ||||| || || ||| ||| || || Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAG 9118 Query 33418 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGT 33475 |||||||| ||||| || ||| || || || | | || || | || | | | | Sbjct 9117 AAGAAGATACCTTCGAC-GCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATC- 9060 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 ||| ||||| | |||||| | || ||||| || ||||| || ||||| || | Sbjct 9059 CATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTG 9000 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | ||||||| | | | || || ||||||| | || ||||| | | ||||||| Sbjct 8999 CGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTAT 8940 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || ||||| || || ||||| || ||||| |||||||||||| | || || | Sbjct 8939 ACATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAG 8880 Query 33656 TAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 | ||||| |||| ||| ||||| || | ||| || || ||||||||| Sbjct 8879 AGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGAT 8821 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 33773 || || || || || | || ||||| || || | ||| || | ||| || || | Sbjct 8820 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTC 8762 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||| ||| |||| |||| |||||||||||| | ||||| || ||||| || || Sbjct 8761 CCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGC 8702 Query 33834 CTTTTTATACATGTTCCAGAT 33854 || || ||||| | |||||| Sbjct 8701 TTTCTTGTACATCTCCCAGAT 8681 >seq205226 Length=4968 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | || || | |||| | || | || ||| |||| |||||| Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || ||||||| |||||| | || |||||||| ||| || Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || |||| || || || ||| ||||| ||||| || Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| |||| | ||||| ||||| Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 >seq100826 Length=54576 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| | || | || ||| |||| |||||| Sbjct 29539 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACC 29598 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || ||||| |||||| | || ||||||||| ||| || Sbjct 29599 ATTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGA 29658 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || |||| || || || ||| || |||||||| || Sbjct 29659 AACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATAT 29718 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| |||| | ||||| ||||| Sbjct 29719 CCCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620866338320480