Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 187 3e-42
seq27195 154 2e-32
seq205226 95.1 2e-14
seq100826 89.7 6e-13
>seq146431
Length=15796
Score = 187 bits (206), Expect = 3e-42
Identities = 382/560 (68%), Gaps = 6/560 (1%)
Strand=Plus/Plus
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
|||||||| |||||||| ||||| | ||| ||||||| || | |||||| || ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417
|| | ||| ||||| || ||||| || |||||||| || || ||| ||| || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241
Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTC 33476
|||||||| ||||| || ||| || || | | || || || || | | | |
Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-C 4300
Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536
|| ||||| | |||||| | || ||||| |||||||| || ||||| | ||
Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360
Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596
|| |||| | | | || || ||||||| | |||||||||| || ||||||||
Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420
Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656
||| || ||||| || || ||||| || || |||||||||||||| | || ||||
Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480
Query 33657 AATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715
| ||||| |||| ||| ||||| || | |||||| || ||||||||| |
Sbjct 4481 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539
Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTC 33774
| || || || || | || ||||| || || | ||| || | ||| || || | |
Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598
Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834
|| ||| |||| |||| |||||||||||| | ||||| || ||||| || ||
Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658
Query 33835 TTTTTATACATGTTCCAGAT 33854
|| || ||||| | ||||||
Sbjct 4659 TTCTTGTACATCTCCCAGAT 4678
>seq27195
Length=13093
Score = 154 bits (170), Expect = 2e-32
Identities = 377/561 (67%), Gaps = 8/561 (1%)
Strand=Plus/Minus
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
|||| || |||||||||||||| | || ||||||| |||| ||||| || ||
Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417
|| | || ||||| || || || ||||| ||||| || || ||| ||| || ||
Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAG 9118
Query 33418 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGT 33475
|||||||| ||||| || ||| || || || | | || || | || | | | |
Sbjct 9117 AAGAAGATACCTTCGAC-GCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATC- 9060
Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535
||| ||||| | |||||| | || ||||| || ||||| || ||||| || |
Sbjct 9059 CATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTG 9000
Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595
| ||||||| | | | || || ||||||| | || ||||| | | |||||||
Sbjct 8999 CGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTAT 8940
Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655
|||| || ||||| || || ||||| || ||||| |||||||||||| | || || |
Sbjct 8939 ACATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAG 8880
Query 33656 TAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714
| ||||| |||| ||| ||||| || | ||| || || |||||||||
Sbjct 8879 AGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGAT 8821
Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 33773
|| || || || || | || ||||| || || | ||| || | ||| || || |
Sbjct 8820 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTC 8762
Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833
||| ||| |||| |||| |||||||||||| | ||||| || ||||| || ||
Sbjct 8761 CCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGC 8702
Query 33834 CTTTTTATACATGTTCCAGAT 33854
|| || ||||| | ||||||
Sbjct 8701 TTTCTTGTACATCTCCCAGAT 8681
>seq205226
Length=4968
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| ||||| | || | || || | |||| | || | || ||| |||| ||||||
Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| ||||| || || ||||||| |||||| | || |||||||| ||| ||
Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| || || || || |||| || || || ||| ||||| ||||| ||
Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
||||| ||||||||||| |||| | ||||| |||||
Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727
>seq100826
Length=54576
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| ||||| | || | ||| || | ||| | || | || ||| |||| ||||||
Sbjct 29539 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACC 29598
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| ||||| || || ||||| |||||| | || ||||||||| ||| ||
Sbjct 29599 ATTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGA 29658
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| || || || || |||| || || || ||| || |||||||| ||
Sbjct 29659 AACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATAT 29718
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
||||| ||||||||||| |||| | ||||| |||||
Sbjct 29719 CCCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620866338320480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |