Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq252826 109 6e-19 seq253833 93.3 5e-14 >seq252826 Length=193385 Score = 109 bits (120), Expect = 6e-19 Identities = 498/767 (65%), Gaps = 36/767 (5%) Strand=Plus/Minus Query 6467 AGAGCTTCACCGAAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGA 6526 || ||||| |||||||| || ||||| |||||||||||||| || || ||||| || Sbjct 44895 AGCGCTTCTTTGAAGCAAACCGCTTTTGCAGCGATAACATGCATCAATGGGCCACCTTGG 44836 Query 6527 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6586 | || ||||| | || ||||||| ||||| || | | |||| || | || Sbjct 44835 TTGCCTGGGAATACCGCTGAATTTAGCTTCTTAGCCAACACTTCATCACGAGCCAAGATC 44776 Query 6587 AGACCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACGTCAGCACCC 6646 ||||| ||| ||||| || | |||||||| ||||||| ||| || || |||| | Sbjct 44775 AGACCTGAACGCGGGCCACGTAGGGTTTTATGCGTTGTAGTAGTCACGACATCAG---CG 44719 Query 6647 CATTTGAGTGGATTAGCATGAAGTTTTGATGCGACGAATCCAGCAAAGTGGGCCATATCG 6706 | || ||| | | || | ||||| | ||||||| ||| |||||||| Sbjct 44718 AAAGGGACTGGGCTTGGATATACGCCACCAGCGACCAGACCAGCAACGTGCGCCATATCT 44659 Query 6707 ACCATCAACTTCGCGCCAGACAT-ATCAGCAATG-CTGCGAAGTGCTGAATAATCCATCT 6764 || | | | |||||| ||| | ||||| ||| | ||| |||| ||| | Sbjct 44658 ACTAGTAGATACGCGCC-GACTTCGTCAGCGATGTCACGGAAACGCTG------CCA-AT 44607 Query 6765 CATCTAATTGGTGGACGAAGGCTGAATAACCAACGACAATCAATTTGAGATTCGGGATAG 6824 || | | || ||| | | |||||| ||||| ||| |||| ||| | || | Sbjct 44606 CAACCACTT-GTGAA--TACGCTGAAAAACCAGCGATGATCATTTTTGGCTTGTG----- 44555 Query 6825 ATTTA-GCGATTTCGCGAAT-TTTGAAAAGA-TCCAAATGACCGTAGGCATCGAC---AC 6878 || | ||| | ||| | |||| | | || | | |||| | | || || | Sbjct 44554 -TTCACGCGCTAGCGCATCTACTTGATCATAGTCGATAAGACCCGTGCCTTCTACCAACC 44496 Query 6879 CGTAATG-ATGGAAGTCGTAATTGCGGCCTGACGCATTTGCTTTATGC-CCATGTGTTAA 6936 |||| || | | | | ||| || | ||||| | | ||| | | || ||||| || || Sbjct 44495 CGTACTGTACCGCA-TTGTAGTTCAGACCTGA-GAAGTTGATGTGCGCGCCATGCGTCAA 44438 Query 6937 ATGACCACCGCAATCCAAAGACATCGCCAA-TACTGAATCGCCTGGACTC-AGCAACGCA 6994 |||||||| ||| | ||| ||||| ||||| ||| ||| || ||||| || Sbjct 44437 GTGACCACCAGCATCTAGGCTCAT-GCCAAGTACTGTATC-ATTGGCTTCAAGCAATGCT 44380 Query 6995 TGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAA 7054 | | || || |||||| || ||| ||||| || || ||||| || | | | Sbjct 44379 AAGAATACTGCAGAGTTTGCTTGACTACCTGAATGCGGCTGGACGTTCACGTATTCAGCA 44320 Query 7055 CTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAA 7114 | |||| ||||| ||||| ||||| |||| | ||| ||| | ||| | | ||||| Sbjct 44319 CCGAACAACTCTTTTGCACGATCAATGGCCAATTGCTCAATCACGTCGACATGCTCACAA 44260 Query 7115 CCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCT 7174 || ||||| || || || || ||||| || ||||| || |||||||| | | || ||| Sbjct 44259 CCACCGTAGTAACGCTTACCAGGATAGCCTTCAGCGTATTTGTTGGTTAGATCAGTGCCT 44200 Query 7175 TGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCAA 7221 || |||| ||| || | | || |||||||| || |||||||| Sbjct 44199 TGTGCTTCCATCACTGCTTGTGAGCAGTAGTTTTCAGAGGCAATCAA 44153 >seq253833 Length=47758 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 54787 AAGCAGGAATCGCGATCGCAGCGAGTATAGCAATAATCACAACAACGATCATAAGTTCGA 54846 |||||||||| ||||||||||| || ||| | ||||| ||||||||||||| ||||||| Sbjct 21336 AAGCAGGAATAGCGATCGCAGCTAGAATACCGATAATAGCAACAACGATCATTAGTTCGA 21277 Query 54847 TCAGTGTAAAACCTTT 54862 | || ||||||||||| Sbjct 21276 TTAGGGTAAAACCTTT 21261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551505205302240