Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_007047.1
Length=39620
Score E
Sequences producing significant alignments: (Bits) Value
seq81513 170 5e-38
seq244084 156 1e-33
seq292 102 2e-17
>seq81513
Length=399
Score = 170 bits (188), Expect = 5e-38
Identities = 193/259 (75%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 31660 TGGTTTAAATGCAATACATTACAAGATACCAGAAAGATAATGACGGCACTTATTCCGTCG 31719
|| |||||||||| | || || |||||||| |||| ||||| | |||||||||||
Sbjct 141 TGATTTAAATGCAGCAAATCACTAGATACCAATTGGATAGCGACGGTATTTATTCCGTCG 200
Query 31720 TTGCTACTGGTGTTGAACTTGAACAAAGTCACATTGACTTGCTAGAAAACGGATATCCAC 31779
|||| |||||||||||| | ||| | ||||||| || | |||| ||||| |||
Sbjct 201 TTGCCACTGGTGTTGAATTAGAAAATAGTCACACAGAACTTATAGATAACGGTTATAGCT 260
Query 31780 TAAAAGCAGAAGTAGAGGTTCCGGACAATAAAAAGTTATCTATAGAACAACGTaaaaaaa 31839
|||| || | ||| ||||| || |||||| | | ||||| || ||||||||||| |
Sbjct 261 TAAACGCTAATGTAACTGTTCCAGATAATAAATTGATTTCTATTGACCAACGTAAAAAGA 320
Query 31840 TATTCGCAATGTGTAGAGATATAGAACTTCACTGGGGCGAACCAGTGGAATCAACTAGAA 31899
|||| || ||||||| |||||| ||| | ||||||| |||||||| ||| || |||
Sbjct 321 TATTTGCCATGTGTAAAGATATTGAATTGTACTGGGGAGAACCAGTAGAAGCATTAAGAC 380
Query 31900 AATTATTACAAACAGAATT 31918
|| ||| |||| |||||
Sbjct 381 AAAGATTTCAAAGTGAATT 399
>seq244084
Length=450
Score = 156 bits (172), Expect = 1e-33
Identities = 238/339 (70%), Gaps = 0/339 (0%)
Strand=Plus/Minus
Query 5496 ATCGCATTTGTAAATCCAAACGACACAGCTGAGTATTTAGCGAACGGTTTTATTAACTCA 5555
|||||||| ||||| || |||||| ||| | ||||||| | ||||| || ||||||
Sbjct 448 ATCGCATTAGTAAACCCTAACGACGTAGCGGGTCATTTAGCAGATGGTTTCATCAACTCA 389
Query 5556 ACAGGTGCGCAATTCGGTGTAAACCTCTTAACACCGTATGTAGGAGTTAAAATTGTAGAG 5615
| ||| | |||||||| ||||| | ||||| || |||||||| || || | | ||
Sbjct 388 AATGGTTCTCAATTCGGCTTAAACTTATTAACGCCATATGTAGGTGTGCAAGTGATCGAA 329
Query 5616 TTTGCAGACGTGCCACAAGGTGAAGTTTGGATGACGGTGGCCGAAAATTTAAACGTAGCA 5675
|| ||||||| || ||||| || | ||||| || ||||| |||||||||||
Sbjct 328 TTCTCAGACGTACCTCAAGGCAGCGTGTACATGACTACAGCAGAAAACTTAAACGTAGCG 269
Query 5676 TATGCGAACCCACGCGGTGAGTTATCACGTGCATTTGCATTTGCGACTGATGCGACTGGT 5735
||||| || || | || || | | || || ||||| | ||| || ||
Sbjct 268 TATGCAAATCCTCAAGGCGAAATGGGCAGAGCGTTCAACTTTGCATCAGATCAAACAGGA 209
Query 5736 TTTGTTGGTGTCTTACACGATATCCAACCACAACGTTTAACATCAGATACTATTTATGCG 5795
||||| || || || || || || ||| || | ||||||||| ||||||| | | ||
Sbjct 208 TTTGTAGGCGTATTGCATGACATTCAAGCAAATCGTTTAACAGCAGATACAGTATTCGCA 149
Query 5796 TCTGCTATCTCAATGTTCCCAGAGAATATTGACGCGGTT 5834
|| || || ||||||||||| || ||| ||||||| |||
Sbjct 148 TCAGCAATTTCAATGTTCCCTGAAAATGTTGACGCAGTT 110
>seq292
Length=255
Score = 102 bits (112), Expect = 2e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 5157 CCAAACGGAGATGTAGCAGAAGGTGACGTAATTCCTTTAACAAAAGTAACTCGTGAACAA 5216
|||||||| || || || || || ||| | ||||| ||||| ||||| || ||||
Sbjct 1 CCAAACGGTGACGTTGCTGAGGGCGACATCATTCCATTAACTAAAGTTGAACGCGAACTT 60
Query 5217 GTTGATATCACTGAATTACAGTTTGCTAAATATCGTAAATCAACATCAGCTGAAGCGATT 5276
|| | ||||| || | || || ||| | ||||||||||||||||| || || ||
Sbjct 61 GTGAACATCACAGAGCTGCAATTCCGTAAGTTCCGTAAATCAACATCAGCAGAGGCTATA 120
Query 5277 CAAGCGCATGGTTATGATTTAGCTATTAACCAAACTGACAATGAGATGATTAAGTATGTT 5336
|| | || ||||||||| |||| || |||| || ||| |||| | || ||||||
Sbjct 121 CAGTCACACGGTTATGATCTAGCAATCAACCGCACAGACGCTGAGCTTATCCGCTATGTT 180
Query 5337 CAGAAAAAGTTCCG 5350
||||| || |||||
Sbjct 181 CAGAAGAAATTCCG 194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 126260458089552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |