Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007047.1 Length=39620 Score E Sequences producing significant alignments: (Bits) Value seq81513 170 5e-38 seq244084 156 1e-33 seq292 102 2e-17 >seq81513 Length=399 Score = 170 bits (188), Expect = 5e-38 Identities = 193/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 31660 TGGTTTAAATGCAATACATTACAAGATACCAGAAAGATAATGACGGCACTTATTCCGTCG 31719 || |||||||||| | || || |||||||| |||| ||||| | ||||||||||| Sbjct 141 TGATTTAAATGCAGCAAATCACTAGATACCAATTGGATAGCGACGGTATTTATTCCGTCG 200 Query 31720 TTGCTACTGGTGTTGAACTTGAACAAAGTCACATTGACTTGCTAGAAAACGGATATCCAC 31779 |||| |||||||||||| | ||| | ||||||| || | |||| ||||| ||| Sbjct 201 TTGCCACTGGTGTTGAATTAGAAAATAGTCACACAGAACTTATAGATAACGGTTATAGCT 260 Query 31780 TAAAAGCAGAAGTAGAGGTTCCGGACAATAAAAAGTTATCTATAGAACAACGTaaaaaaa 31839 |||| || | ||| ||||| || |||||| | | ||||| || ||||||||||| | Sbjct 261 TAAACGCTAATGTAACTGTTCCAGATAATAAATTGATTTCTATTGACCAACGTAAAAAGA 320 Query 31840 TATTCGCAATGTGTAGAGATATAGAACTTCACTGGGGCGAACCAGTGGAATCAACTAGAA 31899 |||| || ||||||| |||||| ||| | ||||||| |||||||| ||| || ||| Sbjct 321 TATTTGCCATGTGTAAAGATATTGAATTGTACTGGGGAGAACCAGTAGAAGCATTAAGAC 380 Query 31900 AATTATTACAAACAGAATT 31918 || ||| |||| ||||| Sbjct 381 AAAGATTTCAAAGTGAATT 399 >seq244084 Length=450 Score = 156 bits (172), Expect = 1e-33 Identities = 238/339 (70%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 5496 ATCGCATTTGTAAATCCAAACGACACAGCTGAGTATTTAGCGAACGGTTTTATTAACTCA 5555 |||||||| ||||| || |||||| ||| | ||||||| | ||||| || |||||| Sbjct 448 ATCGCATTAGTAAACCCTAACGACGTAGCGGGTCATTTAGCAGATGGTTTCATCAACTCA 389 Query 5556 ACAGGTGCGCAATTCGGTGTAAACCTCTTAACACCGTATGTAGGAGTTAAAATTGTAGAG 5615 | ||| | |||||||| ||||| | ||||| || |||||||| || || | | || Sbjct 388 AATGGTTCTCAATTCGGCTTAAACTTATTAACGCCATATGTAGGTGTGCAAGTGATCGAA 329 Query 5616 TTTGCAGACGTGCCACAAGGTGAAGTTTGGATGACGGTGGCCGAAAATTTAAACGTAGCA 5675 || ||||||| || ||||| || | ||||| || ||||| ||||||||||| Sbjct 328 TTCTCAGACGTACCTCAAGGCAGCGTGTACATGACTACAGCAGAAAACTTAAACGTAGCG 269 Query 5676 TATGCGAACCCACGCGGTGAGTTATCACGTGCATTTGCATTTGCGACTGATGCGACTGGT 5735 ||||| || || | || || | | || || ||||| | ||| || || Sbjct 268 TATGCAAATCCTCAAGGCGAAATGGGCAGAGCGTTCAACTTTGCATCAGATCAAACAGGA 209 Query 5736 TTTGTTGGTGTCTTACACGATATCCAACCACAACGTTTAACATCAGATACTATTTATGCG 5795 ||||| || || || || || || ||| || | ||||||||| ||||||| | | || Sbjct 208 TTTGTAGGCGTATTGCATGACATTCAAGCAAATCGTTTAACAGCAGATACAGTATTCGCA 149 Query 5796 TCTGCTATCTCAATGTTCCCAGAGAATATTGACGCGGTT 5834 || || || ||||||||||| || ||| ||||||| ||| Sbjct 148 TCAGCAATTTCAATGTTCCCTGAAAATGTTGACGCAGTT 110 >seq292 Length=255 Score = 102 bits (112), Expect = 2e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 5157 CCAAACGGAGATGTAGCAGAAGGTGACGTAATTCCTTTAACAAAAGTAACTCGTGAACAA 5216 |||||||| || || || || || ||| | ||||| ||||| ||||| || |||| Sbjct 1 CCAAACGGTGACGTTGCTGAGGGCGACATCATTCCATTAACTAAAGTTGAACGCGAACTT 60 Query 5217 GTTGATATCACTGAATTACAGTTTGCTAAATATCGTAAATCAACATCAGCTGAAGCGATT 5276 || | ||||| || | || || ||| | ||||||||||||||||| || || || Sbjct 61 GTGAACATCACAGAGCTGCAATTCCGTAAGTTCCGTAAATCAACATCAGCAGAGGCTATA 120 Query 5277 CAAGCGCATGGTTATGATTTAGCTATTAACCAAACTGACAATGAGATGATTAAGTATGTT 5336 || | || ||||||||| |||| || |||| || ||| |||| | || |||||| Sbjct 121 CAGTCACACGGTTATGATCTAGCAATCAACCGCACAGACGCTGAGCTTATCCGCTATGTT 180 Query 5337 CAGAAAAAGTTCCG 5350 ||||| || ||||| Sbjct 181 CAGAAGAAATTCCG 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126260458089552