Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq75881 407 4e-109 seq217823 260 4e-65 >seq75881 Length=6466 Score = 407 bits (450), Expect = 4e-109 Identities = 677/977 (69%), Gaps = 6/977 (1%) Strand=Plus/Minus Query 25880 TTATTAATCTCTATCACCGTTGAAAATAGAGTTTCTAACAATAACATAATCTACAGTACG 25939 ||| || || |||| ||||| || || || ||| | || | |||||||| ||||| | Sbjct 2677 TTAATACACTTTATCGCCGTTAAAGATTGAATTTTTGACGACCACATAATCGACAGTTCT 2618 Query 25940 TAATGATTTCAAGTCTTTTCCACCGGCATATGAAATTGAGCTTTGTAAATCTTGTTGCAT 25999 | || | || | || || || ||||| ||||| | ||||||||||| | ||| Sbjct 2617 GATTGCCTGCAGCTTGTTACCGCCCGCATACGAAATCGCAGACTGTAAATCTTGCTCCAT 2558 Query 26000 TTCTTTTAAGGTATCCATTAATGACCCCTTATGTTCTACAAACAtttttttACCTTCTAC 26059 || | || || || || || |||||||| |||||||||||||| ||||| || Sbjct 2557 CTCAATCAACGTCTCTGACAAGCTGCCTTTATGTTCAACAAACATTTTTTTTCCTTCGAC 2498 Query 26060 ATTTTTATGTTCGCCTTTTTGAAATTCAGATGCACTACCAAAATATTCTTTATACTGTTT 26119 || || | ||| |||||||| || || || || ||||||||||||||| || Sbjct 2497 GTTCTTTTTTTCACCTTTTTGGAACTCGGACGCCGAGCCAAAATATTCTTTAACGCGTAA 2438 Query 26120 ACCATCAAGTTCTACAGTTTCACCAGGTGATTCTTCGTGTGCCGCAAATAATGAACCAAT 26179 ||||||| ||| || ||||| || || ||||||||| ||||||| | |||||| || Sbjct 2437 GCCATCAACTTCGTGCGTCTCACCCGGGGACTCTTCGTGTCCCGCAAACAGTGAACCGAT 2378 Query 26180 CATGACCATTGATGCACCAAATCTAATTGACTTAGCGATGTCGCCATGCGTTCTTATGCC 26239 ||| ||||| | || ||||| | || || || || |||||||| || || | || || Sbjct 2377 CATCACCATCGTCGCCCCAAAACGAACCGATTTTGCAATGTCGCCGTGGGTCCGGATACC 2318 Query 26240 ACCATCGGCAATCAAAGGTTTACGAGCTGCTTTACTACATATGTTTAATGCCGCTAACTG 26299 ||||| ||||| | ||||||| || ||||| ||| | |||||||| || || Sbjct 2317 GCCATCAGCAATAATTGGTTTACTGGCCGCTTTGGCACACCATCTCAATGCCGCCAATTG 2258 Query 26300 CCAACCACCAGTACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGGACCTAT 26359 ||| || || |||||||| || |||||||| || |||||||| ||| |||| ||||| || Sbjct 2257 CCAGCCTCCCGTACCAAATCCCGTTTTAATTTTCGTAATACACACTTTACCTGGACCGAT 2198 Query 26360 ACCGACTTTGGTAGCATCAGCACCAGCATTTTCTAATTCTCTAACACCTTCTGGCGTACC 26419 || ||||| || || || || || || | ||| | ||| | ||| |||| || || || Sbjct 2197 TCCAACTTTTGTCGCGTCTGCTCCGGCGTGTTCCAGTTCACGAACGGCTTCCGGTGTCCC 2138 Query 26420 AACATTACCAGCAATAACAAAACTATCAGGTATATGGGTTTTAATATGTTTAATCATGTT 26479 || || ||||||||||||||||| || |||| | ||| ||||||| ||||| Sbjct 2137 GACGTTTCCAGCAATAACAAAACTGTCCGGTAACAGCAGTTTGATATGTTGGATCATCCG 2078 Query 26480 TATCACTGAATCTGAGTGACCATGCGCAATATCTATTGTAATATATTCGGGGATTAATTT 26539 || || | || || |||||||| || || || || || || ||||| || | || Sbjct 2077 AATGACCGCTTCCGAATGACCATGAGCGATGTCAATCGTGATGTATTCCGGCGTCAAGCC 2018 Query 26540 TTCTTGAGCTAACTTTTCAATAAA---ATCAAATTCCGCTTTCTTTACACCAACTGAAAT 26596 |||||| || ||| | || | || || ||||||| ||||| ||||| || Sbjct 2017 TTCTTGTGCCAACGTCTCGACGAATGTATATTCTTCCGCT---TTTACGCCAACACTGAT 1961 Query 26597 AGATGCAAATAAGCCTGAATTTTGCATATGTTTTATAAAAGGTATTCTTGCTTCTTCATC 26656 ||||||| || | |||||||| | |||| | || || ||| || Sbjct 1960 TGATGCAATCAAATCGCGTTTTTGCATCGACCGGACAAAATCGAGTCGTGTTTCGGGCTC 1901 Query 26657 AAAACGATGCATGATATAAAAGTAATCATTTTCAGCAAACCATTTCGCTAATTTCTCATT 26716 |||||||||||||| ||||||||| | || || || || | |||| | ||| || | Sbjct 1900 GAAACGATGCATGATGTAAAAGTAACCGTTCTCTGCCAAATAAGTCGCAATTTTTTCGTC 1841 Query 26717 CATAACTGTTTGCATATTTGCAGGAACTACAGGTAGCTTGAATTTTTTCGGACCAAATTG 26776 || | || |||||||| || || || || |||| ||| || | |||||| | Sbjct 1840 AATGATCGTCTGCATATTGGCCGGCACGACCGGTAACTTAAACCGTCGTCCACCAAACTC 1781 Query 26777 GATAGTTGTATCACATTCTGATCTACTCTCAACTATACATTTATTAGGTATTAATTGAAT 26836 | || ||||||||||| || | || | || || |||| ||| ||||||||||| Sbjct 1780 AACCGTCGTATCACATTCCGACCGGCTTCCTACGATTGATTTTGCAGGAATTAATTGAAT 1721 Query 26837 ATCTTCATAGTCAAATA 26853 ||||||||| ||||||| Sbjct 1720 ATCTTCATAATCAAATA 1704 >seq217823 Length=242 Score = 260 bits (288), Expect = 4e-65 Identities = 195/229 (85%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26632 TAAAAGGTATTCTTGCTTCTTCATCAAAACGATGCATGATATAAAAGTAATCATTTTCAG 26691 |||| || ||||| ||| |||||| || ||||||||||||||||| ||||| ||||| | Sbjct 1 TAAACGGAATTCTAGCTGCTTCATTGAATCGATGCATGATATAAAAATAATCGTTTTCCG 60 Query 26692 CAAACCATTTCGCTAATTTCTCATTCATAACTGTTTGCATATTTGCAGGAACTACAGGTA 26751 ||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| | Sbjct 61 CAAACCATTCCGCTAATTCTTCATTCATAACTGTTTGCATATTTGCTGGTACTACAGGCA 120 Query 26752 GCTTGAATTTTTTCGGACCAAATTGGATAGTTGTATCACATTCTGATCTACTCTCAACTA 26811 ||| || ||| | | |||||||| || ||||||||||||||| || | ||| ||||| | Sbjct 121 ACTTAAAGTTTCTTGAACCAAATTTGACAGTTGTATCACATTCAGAGCGACTATCAACAA 180 Query 26812 TACATTTATTAGGTATTAATTGAATATCTTCATAGTCAAATATTTTCAT 26860 |||||||||| ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 181 TACATTTATTTGGTATCAATTGGATATCTTCATAATCAAAAATTTTCAT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146168282831528