Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_007052.1
Length=45861
Score E
Sequences producing significant alignments: (Bits) Value
seq75881 407 4e-109
seq217823 260 4e-65
>seq75881
Length=6466
Score = 407 bits (450), Expect = 4e-109
Identities = 677/977 (69%), Gaps = 6/977 (1%)
Strand=Plus/Minus
Query 25880 TTATTAATCTCTATCACCGTTGAAAATAGAGTTTCTAACAATAACATAATCTACAGTACG 25939
||| || || |||| ||||| || || || ||| | || | |||||||| ||||| |
Sbjct 2677 TTAATACACTTTATCGCCGTTAAAGATTGAATTTTTGACGACCACATAATCGACAGTTCT 2618
Query 25940 TAATGATTTCAAGTCTTTTCCACCGGCATATGAAATTGAGCTTTGTAAATCTTGTTGCAT 25999
| || | || | || || || ||||| ||||| | ||||||||||| | |||
Sbjct 2617 GATTGCCTGCAGCTTGTTACCGCCCGCATACGAAATCGCAGACTGTAAATCTTGCTCCAT 2558
Query 26000 TTCTTTTAAGGTATCCATTAATGACCCCTTATGTTCTACAAACAtttttttACCTTCTAC 26059
|| | || || || || || |||||||| |||||||||||||| ||||| ||
Sbjct 2557 CTCAATCAACGTCTCTGACAAGCTGCCTTTATGTTCAACAAACATTTTTTTTCCTTCGAC 2498
Query 26060 ATTTTTATGTTCGCCTTTTTGAAATTCAGATGCACTACCAAAATATTCTTTATACTGTTT 26119
|| || | ||| |||||||| || || || || ||||||||||||||| ||
Sbjct 2497 GTTCTTTTTTTCACCTTTTTGGAACTCGGACGCCGAGCCAAAATATTCTTTAACGCGTAA 2438
Query 26120 ACCATCAAGTTCTACAGTTTCACCAGGTGATTCTTCGTGTGCCGCAAATAATGAACCAAT 26179
||||||| ||| || ||||| || || ||||||||| ||||||| | |||||| ||
Sbjct 2437 GCCATCAACTTCGTGCGTCTCACCCGGGGACTCTTCGTGTCCCGCAAACAGTGAACCGAT 2378
Query 26180 CATGACCATTGATGCACCAAATCTAATTGACTTAGCGATGTCGCCATGCGTTCTTATGCC 26239
||| ||||| | || ||||| | || || || || |||||||| || || | || ||
Sbjct 2377 CATCACCATCGTCGCCCCAAAACGAACCGATTTTGCAATGTCGCCGTGGGTCCGGATACC 2318
Query 26240 ACCATCGGCAATCAAAGGTTTACGAGCTGCTTTACTACATATGTTTAATGCCGCTAACTG 26299
||||| ||||| | ||||||| || ||||| ||| | |||||||| || ||
Sbjct 2317 GCCATCAGCAATAATTGGTTTACTGGCCGCTTTGGCACACCATCTCAATGCCGCCAATTG 2258
Query 26300 CCAACCACCAGTACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGGACCTAT 26359
||| || || |||||||| || |||||||| || |||||||| ||| |||| ||||| ||
Sbjct 2257 CCAGCCTCCCGTACCAAATCCCGTTTTAATTTTCGTAATACACACTTTACCTGGACCGAT 2198
Query 26360 ACCGACTTTGGTAGCATCAGCACCAGCATTTTCTAATTCTCTAACACCTTCTGGCGTACC 26419
|| ||||| || || || || || || | ||| | ||| | ||| |||| || || ||
Sbjct 2197 TCCAACTTTTGTCGCGTCTGCTCCGGCGTGTTCCAGTTCACGAACGGCTTCCGGTGTCCC 2138
Query 26420 AACATTACCAGCAATAACAAAACTATCAGGTATATGGGTTTTAATATGTTTAATCATGTT 26479
|| || ||||||||||||||||| || |||| | ||| ||||||| |||||
Sbjct 2137 GACGTTTCCAGCAATAACAAAACTGTCCGGTAACAGCAGTTTGATATGTTGGATCATCCG 2078
Query 26480 TATCACTGAATCTGAGTGACCATGCGCAATATCTATTGTAATATATTCGGGGATTAATTT 26539
|| || | || || |||||||| || || || || || || ||||| || | ||
Sbjct 2077 AATGACCGCTTCCGAATGACCATGAGCGATGTCAATCGTGATGTATTCCGGCGTCAAGCC 2018
Query 26540 TTCTTGAGCTAACTTTTCAATAAA---ATCAAATTCCGCTTTCTTTACACCAACTGAAAT 26596
|||||| || ||| | || | || || ||||||| ||||| ||||| ||
Sbjct 2017 TTCTTGTGCCAACGTCTCGACGAATGTATATTCTTCCGCT---TTTACGCCAACACTGAT 1961
Query 26597 AGATGCAAATAAGCCTGAATTTTGCATATGTTTTATAAAAGGTATTCTTGCTTCTTCATC 26656
||||||| || | |||||||| | |||| | || || ||| ||
Sbjct 1960 TGATGCAATCAAATCGCGTTTTTGCATCGACCGGACAAAATCGAGTCGTGTTTCGGGCTC 1901
Query 26657 AAAACGATGCATGATATAAAAGTAATCATTTTCAGCAAACCATTTCGCTAATTTCTCATT 26716
|||||||||||||| ||||||||| | || || || || | |||| | ||| || |
Sbjct 1900 GAAACGATGCATGATGTAAAAGTAACCGTTCTCTGCCAAATAAGTCGCAATTTTTTCGTC 1841
Query 26717 CATAACTGTTTGCATATTTGCAGGAACTACAGGTAGCTTGAATTTTTTCGGACCAAATTG 26776
|| | || |||||||| || || || || |||| ||| || | |||||| |
Sbjct 1840 AATGATCGTCTGCATATTGGCCGGCACGACCGGTAACTTAAACCGTCGTCCACCAAACTC 1781
Query 26777 GATAGTTGTATCACATTCTGATCTACTCTCAACTATACATTTATTAGGTATTAATTGAAT 26836
| || ||||||||||| || | || | || || |||| ||| |||||||||||
Sbjct 1780 AACCGTCGTATCACATTCCGACCGGCTTCCTACGATTGATTTTGCAGGAATTAATTGAAT 1721
Query 26837 ATCTTCATAGTCAAATA 26853
||||||||| |||||||
Sbjct 1720 ATCTTCATAATCAAATA 1704
>seq217823
Length=242
Score = 260 bits (288), Expect = 4e-65
Identities = 195/229 (85%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26632 TAAAAGGTATTCTTGCTTCTTCATCAAAACGATGCATGATATAAAAGTAATCATTTTCAG 26691
|||| || ||||| ||| |||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 1 TAAACGGAATTCTAGCTGCTTCATTGAATCGATGCATGATATAAAAATAATCGTTTTCCG 60
Query 26692 CAAACCATTTCGCTAATTTCTCATTCATAACTGTTTGCATATTTGCAGGAACTACAGGTA 26751
||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 61 CAAACCATTCCGCTAATTCTTCATTCATAACTGTTTGCATATTTGCTGGTACTACAGGCA 120
Query 26752 GCTTGAATTTTTTCGGACCAAATTGGATAGTTGTATCACATTCTGATCTACTCTCAACTA 26811
||| || ||| | | |||||||| || ||||||||||||||| || | ||| ||||| |
Sbjct 121 ACTTAAAGTTTCTTGAACCAAATTTGACAGTTGTATCACATTCAGAGCGACTATCAACAA 180
Query 26812 TACATTTATTAGGTATTAATTGAATATCTTCATAGTCAAATATTTTCAT 26860
|||||||||| ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 181 TACATTTATTTGGTATCAATTGGATATCTTCATAATCAAAAATTTTCAT 229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146168282831528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |