Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq70799 125 7e-24 seq91578 100 3e-16 seq167623 98.7 9e-16 seq209069 91.5 1e-13 seq210337 89.7 5e-13 seq117562 86.0 6e-12 seq26664 86.0 6e-12 seq26661 86.0 6e-12 seq189123 84.2 2e-11 seq54724 84.2 2e-11 >seq70799 Length=497 Score = 125 bits (138), Expect = 7e-24 Identities = 189/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCAC 71731 || |||||||| || |||||| |||| || |||| | || || || || || ||| Sbjct 315 ACACATGATGATCTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCAC 256 Query 71732 GGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAG 71791 || | ||| |||||||||||||| |||||||| || || |||||| | ||||| || Sbjct 255 GGTTTCCTTCGCATGTACTGGGCTAAAAAGATACTGGAATGGACTGATACTCCAGATAGA 196 Query 71792 GCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAAC 71851 || || | || | |||||||| || || | || || | ||||||||||| || | Sbjct 195 GCACTGGCCGATGCCATTTATCTCAATGACAAGTATAGCATGGACGGTCGCGACCCAAGT 136 Query 71852 GGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGT 71911 |||| ||| || || |||||| || || ||| |||| ||| | | |||| | Sbjct 135 GGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCAGGGGTGGAGAGAAAGA 76 Query 71912 CAAGTGTTTGGTAAAATTCGCTATATGAA 71940 || | ||||| |||||| | |||||||| Sbjct 75 GAAATTTTTGGAAAAATTAGGTATATGAA 47 >seq91578 Length=16840 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| || |||| | |||||| Sbjct 471 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACGCTCGAGGTTGAATCA 412 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || ||||| | ||||| ||||| ||||| ||||| || || || ||| Sbjct 411 TCGGATACGATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCGGAT 352 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| || | |||| || ||| |||||||||||||| | | | || |||||| Sbjct 351 CAACAACGATTGATTTTCGCCGGAAAACAACTCGAAGACGGACGTACTCTCGCCGACTAC 292 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | ||||| ||||| Sbjct 291 AACATCCAGAAGGAATCAACACTTCATCTCGTCCT 257 >seq167623 Length=7090 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || |||| || |||| | |||||| | Sbjct 2393 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACTCTCGAGGTCGAATCATCC 2452 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| ||||| ||||| ||||| || || || ||||| Sbjct 2453 GATACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAG 2512 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| || ||| |||||||||||||| | | | || ||| || ||| Sbjct 2513 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGACGGCCGTACTCTCGCCGATTACAAC 2572 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||||| ||||| Sbjct 2573 ATCCAGAAGGAATCGACGCTTCATCTCGTCCT 2604 >seq209069 Length=2205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || ||||||||||| || || | | | || ||||| ||| Sbjct 1822 GACAAAGAAGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTTGTAAGCAACTTGAA 1763 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || ||| | ||| || || ||||| || ||||| || ||| | ||||| ||| | Sbjct 1762 GATGGTA-CAACCTTAGCGGATTACAACATCCACAAAGAGTCCACTCTTCATCTTGTCTT 1704 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || ||||| |||| Sbjct 1703 GAGGCTCAGAGGTGGAA 1687 >seq210337 Length=1863 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | |||||||| | || || |||| | || Sbjct 1724 ATGCAAATATTCGTGAAAACGCTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1665 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 1664 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 1605 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | || ||| |||||||| ||||||| | | | | ||||||||| Sbjct 1604 CAACGATTGATCTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGGCTGACTATAAC 1545 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || | || |||| || || | ||||| || Sbjct 1544 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||||||||| ||||| || ||||| |||||||| | || || ||||| || || Sbjct 491 GACAAAGAAGGGATCCCTCCGGACCAACAGAGACTCATCTTCGCTGGTAAACAGCTTGAG 432 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | | || | || || || || ||||| |||||||| ||| | ||| |||| || Sbjct 431 GATGGTCG-GACTTTGGCGGATTACAATATTCAGAAAGAATCGACTCTTCATTTGGTTCT 373 Query 26981 GAGACTTAGAGGAGGAA 26997 | ||| | || |||| Sbjct 372 TCGTCTTCGTGGTGGAA 356 >seq117562 Length=2070 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | |||||||| | || || |||| | || Sbjct 1003 ATGCAAATATTCGTGAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1062 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 1063 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 1122 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | || ||| ||||| || ||||||| | | | | ||||||||| Sbjct 1123 CAACGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCTGACTATAAC 1182 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || | || |||| || || | ||||| || Sbjct 1183 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1229 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || || || || || | || ||| | || | || Sbjct 1686 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 1745 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | ||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 1746 GGACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 1805 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || ||||| || | | ||| || ||||||||||||| | || | ||| ||||| | Sbjct 1806 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAAGATG-GACGCACCTTAGCAGACTACA 1864 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||||| ||||| || ||| | ||| |||| || Sbjct 1865 ATATTCAGAAAGAGTCGACTCTTCATTTGGTACT 1898 >seq26664 Length=6282 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || |||| || |||| | |||||| | Sbjct 5872 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACTCTCGAGGTCGAATCATCC 5813 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| ||||| ||||| ||||| || || || || || Sbjct 5812 GATACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAG 5753 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || || |||||||||||||| | | | || |||||| ||| Sbjct 5752 CAGCGATTGATCTTCGCGGGAAAACAACTCGAAGACGGACGTACTCTCGCCGACTACAAC 5693 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||||| || || Sbjct 5692 ATCCAGAAGGAATCAACGCTTCATCTCGTGCT 5661 >seq26661 Length=2801 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | || || || || || ||||| || | || ||| | || | || | | | Sbjct 1858 ATGCAAATCTTCGTGAAGACCTTGACTGGTAAGACTATTACCCTTGAGGTGGAGAGCTCA 1917 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | || ||| |||||| ||||||||||| || ||||| || || Sbjct 1918 -GACACCATCGACAACGTGAAAGCTAAGATTCAGGACAAAGAAGGTATTCCTCCGGACCA 1976 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || || || || ||||| |||| | | | ||||||||| Sbjct 1977 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACACTGGCCGACTATAA 2036 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||||| || ||||||||| | || ||||| || Sbjct 2037 CATTCAGAAGGAATCTACTCTGCACTTGGTCTTG 2070 >seq189123 Length=1720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | ||||| |||||| | ||||| ||| | || ||| | ||| | || | Sbjct 462 AATGTAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAATTGAGAGATC 521 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | ||||| ||| ||| || || |||||||| ||||| || || Sbjct 522 GGACACAATTGACAATGTCAAGGCAAAAATTTAAGATAAGGAAGGGATCCCTCCGGACCA 581 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 |||||||||||| | || || ||||| ||| |||| | | ||| Sbjct 582 ACAAAGACTCATCTTCGCTGGTAAACAGCTCAAAGACGGTCGAA 625 >seq54724 Length=7877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| || || || || || ||| | || ||| |||| | || | | | Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | || ||| ||||| ||||||||||| || ||||| || || Sbjct 1935 -GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || ||| | || | | ||| || |||||||| || | |||| | |||||| || Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| |||||| | || |||| || | ||| | || || Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 2101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477063500052160