Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq34509 134 4e-26 seq255492 131 4e-25 seq231195 107 5e-18 seq29837 102 2e-16 seq191921 100 7e-16 seq29830 96.9 9e-15 seq125822 95.1 3e-14 >seq34509 Length=4973 Score = 134 bits (148), Expect = 4e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||| ||||| |||||| ||| || Sbjct 2337 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTCTATGTGGCAGACGGGGAGCTCTC 2395 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || || || ||||||||||| |||||||| ||||| Sbjct 2396 ATGTCAAATGTATCAGCGTTCAGCAGACATGGGTCTTGGTGTGCCGTTTAACATTGCGTC 2455 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| || ||||||| | |||| || ||||| || || Sbjct 2456 CTACTCTCTTCTTACTTGCATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTAT 2515 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 || ||||| || |||| ||||| |||| ||| || Sbjct 2516 CCATGTTATTGGGGATGGTCATGTGTACAAAAATCA 2551 >seq255492 Length=11799 Score = 131 bits (144), Expect = 4e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| ||||| || | | | ||| ||||| |||||| || ||| ||| || Sbjct 6665 ATGGCGCTTCCTCCATGCCA-CATGTTTGCACAGTTCTATGTAGCAGAAGGGGAGCTCTC 6607 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || || || ||||||||||| |||||||| ||||| Sbjct 6606 ATGTCAAATGTATCAGCGTTCAGCGGACATGGGTCTTGGTGTGCCGTTTAACATTGCTTC 6547 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| || ||||||| | |||| || ||||| || | Sbjct 6546 CTACTCTCTTCTTACTTGCATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTAC 6487 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 || ||||| || ||||| ||||| |||| ||| || Sbjct 6486 CCATGTTATTGGGGATGCTCATGTGTACAAAAATCA 6451 >seq231195 Length=5996 Score = 107 bits (118), Expect = 5e-18 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||||||||| || | ||| ||||| || | |||||| |||| | Sbjct 3253 ATGAAAGATGACAGCATCGAGGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 3194 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| || || |||||||| || | || ||| | |||||| | | | |||||||| Sbjct 3193 AAATCTGCTGGTGGCATTGGTGTTTCAGTTCATAATATCCGTGCAACTGGA-AGTTACAT 3135 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 3134 TCGAGGCACAAATGGAACGTCAAATGGTATTGTTCCAATGCTGCGTGTATTCAATGATAC 3075 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || ||||| || ||||| ||| | |||||| Sbjct 3074 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 3036 >seq29837 Length=4748 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | | || |||||||| || | ||| || ||||| ||| || |||| Sbjct 3723 ATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGA 3664 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG 111711 | || || | || ||||||||||| ||||| || | | | |||||||||| Sbjct 3663 ATCCTTCTGATCTTAAACTGATGGCACTTCCTCCATGCCACATGTTTTCACAGTTTTATG 3604 Query 111712 TACACGACGGGATG-CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 | ||| ||| ||||||||||||||||||||||| || || || || |||||||| Sbjct 3603 TTG-CGAATGGAGAACTTTCATGCCAAATGTATCAGCGCTCAGCCGACATGGGTCTTGGC 3545 Query 111771 GTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || ||||| ||||| ||| | || ||||| ||| | ||||||| Sbjct 3544 GTACCATTTAACATTGCCTCATACTCTCTTCTTACGTGCATTCTCGCTCA 3495 >seq191921 Length=6033 Score = 100 bits (110), Expect = 7e-16 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| | ||||| || || ||| ||||| || | ||| ||||| || | Sbjct 4322 TTGCTTTCTGATCTGCATGAAAGATGACAGCATTGAGGGCATATATGAAACACTCAAAGA 4263 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| |||| ||| ||| || || |||||||| || | || ||| | ||||| Sbjct 4262 GTGTGCTGTTATAAGCAAATCTGCTGGTGGCATTGGTGTTTCAGTTCATAATATCCGTGC 4203 Query 363726 A-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | | | | ||||||||||| ||||| ||| || ||||| | ||||| ||| | | Sbjct 4202 AACTGGA-AGTTACATTCGAGGCACCAATGGAACGTCTAATGGTATTGTTCCAATGTTGC 4144 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || || ||||||| | || || ||||| || ||||| ||| | |||||| Sbjct 4143 GTGTATTCAACGATACTGCTCGTTATGTTGACCAAGGGGGAGGCAAGAG-AAAGGG 4089 >seq29830 Length=9971 Score = 96.9 bits (106), Expect = 9e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111592 ATGTCATTGATCAA-ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGG 111650 |||| ||| | ||| || |||||||| || | ||| || ||||| ||| || ||| Sbjct 1037 ATGT-ATTTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGG 1095 Query 111651 AACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTAT 111710 || || || | || ||||||||||| ||||| || | | | ||||||||| Sbjct 1096 AATCCTTCTGATCTTAAACTGATGGCACTTCCTCCATGCCACATGTTTTCACAGTTTTAT 1155 Query 111711 GTACACGACGGGATG-CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGG 111769 || ||| ||| |||||||| |||||||||||||| || || ||||| ||||| || Sbjct 1156 GTTG-CGAATGGAGAACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGG 1214 Query 111770 TGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || ||||| ||||| ||| | || ||||| ||| | ||||||| Sbjct 1215 CGTACCATTTAACATTGCCTCATACTCTCTTCTTACGTGCATTCTCGCTCA 1265 >seq125822 Length=25115 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 ||||||| || |||||||||| || || ||||||||| | ||| | ||||| |||| Sbjct 8046 ATGTCATCGAGCAAATTAAGACGAATCCGGATTCTCGTCGTCTGATTGTCAGTGCTTGGA 8105 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG 111711 | || | ||| ||| | ||||| | || || || || || ||| || ||||||| Sbjct 8106 ATCCCGGTCAATTAGAAGAGATGGCCTTGCCGCCCTGCCACCTGCTGTTTCAATTTTATG 8165 Query 111712 TACACGA-CGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 | | ||| ||| | | | || ||||| | || || || ||||| ||| | | | ||| Sbjct 8166 T-CGCGAACGGAAAGTTGTCGTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGGT 8224 Query 111771 GTTCCGTTTAATATTGCAAGTTACGC 111796 ||||| ||||||||||| |||||| Sbjct 8225 GTTCCATTTAATATTGCTTCTTACGC 8250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298891101372296