Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq54724 116 3e-21 seq210337 104 2e-17 seq117562 104 2e-17 seq167623 102 7e-17 seq26661 98.7 9e-16 seq26664 82.4 7e-11 >seq54724 Length=7877 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || ||| | |||||| |||| || ||| | Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||||||||| || ||||| || || Sbjct 1935 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCAG 1994 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | ||| ||||||||||| || | ||||| | ||| || || Sbjct 1995 CAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 2054 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| ||||| |||| || ||||| Sbjct 2055 ATTCAGAAAGAGTCTACTCTTCACTTGGTGTT 2086 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| ||| | |||||| |||| || ||| Sbjct 1647 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACTATTACCCTCGAGGTTGAGAGTTCT 1706 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || ||||| || ||||| ||||| Sbjct 1707 GACACCATCGACAACGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCTCCGGATCAG 1766 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||| | || | || ||| |||||||| || || Sbjct 1767 CAGAGATTAATCTTCGCCGGAAAGCAACTTGAGGA 1801 >seq210337 Length=1863 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | |||||||| | || || |||| |||||| | Sbjct 1724 ATGCAAATATTCGTGAAAACGCTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1665 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 1664 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 1605 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||| || ||||| ||||||| | | | | | || |||||| Sbjct 1604 CAACGATTGATCTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGGCTGACTATAAC 1545 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | || || || | |||||||||| || Sbjct 1544 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1498 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | ||||| | || || ||| | | Sbjct 1268 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAAACCATTACTCTTGAGGTTGAGAGCTCC 1209 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| ||||| ||||||||||| || ||||| ||||| Sbjct 1208 GATACGATCGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 1149 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 |||||||| || | | ||| |||||||| |||||| ||| | | | | ||||| || Sbjct 1148 CAGAGACTTATCTTTGCCGGTAAGCAACTTGAAGATGGACGTACTCTTGCG-GATTACAA 1090 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| |||||||| || || Sbjct 1089 CATCCAAAAAGAGTCCAC 1072 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || || | |||||| | || || ||| | Sbjct 585 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 526 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| ||||||||||| || ||||| || || Sbjct 525 GGACACTATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGGATCCCTCCGGACCA 466 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||||||| || | || || || || || || |||| | || | || ||||| | Sbjct 465 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCG-GACTTTGGCGGATTACA 407 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||| || ||||||| || Sbjct 406 ATATTCAGAAAGAATCGACTCTTCATTTGGT 376 >seq117562 Length=2070 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || || | |||||| | || || ||| | Sbjct 1686 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 1745 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 1746 GGACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 1805 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||||| || | | ||| |||||||||||||||| | || | ||| || || | Sbjct 1806 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAAGATG-GACGCACCTTAGCAGACTACA 1864 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| ||||| || || ||||||| || Sbjct 1865 ATATTCAGAAAGAGTCGACTCTTCATTTGGT 1895 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | |||||||| | || || |||| |||||| | Sbjct 1003 ATGCAAATATTCGTGAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1062 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 1063 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 1122 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||| || || || ||||||| | | | | | || |||||| Sbjct 1123 CAACGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCTGACTATAAC 1182 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | || || || | |||||||||| || Sbjct 1183 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1229 >seq167623 Length=7090 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||| || |||| ||||| | | Sbjct 2393 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACTCTCGAGGTCGAATCATCC 2452 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | |||||| ||||| ||||| ||||| || || || ||||| Sbjct 2453 GATACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAG 2512 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||||| || ||| || ||||||||||| | | | | || |||||| ||| Sbjct 2513 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGACGGCCGTACTCTCGCCGATTACAAC 2572 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || ||||| || ||||| Sbjct 2573 ATCCAGAAGGAATCGACGCTTCAT 2596 >seq26661 Length=2801 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | |||||| | || || ||| | Sbjct 1858 ATGCAAATCTTCGTGAAGACCTTGACTGGTAAGACTATTACCCTTGAGGTGGAGAGCTCA 1917 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||||||||| || ||||| || || Sbjct 1918 GACACCATCGACAACGTGAAAGCTAAGATTCAGGACAAAGAAGGTATTCCTCCGGACCAG 1977 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| ||||| |||| | | | | ||| |||||| Sbjct 1978 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACACTGGCCGACTATAAC 2037 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || |||||||| Sbjct 2038 ATTCAGAAGGAATCTAC 2054 >seq26664 Length=6282 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||| || |||| ||||| | | Sbjct 5872 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACTCTCGAGGTCGAATCATCC 5813 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | |||||| ||||| ||||| ||||| || || || || || Sbjct 5812 GATACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAG 5753 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || || || ||||||||||| | | | || ||| || ||| Sbjct 5752 CAGCGATTGATCTTCGCGGGAAAACAACTCGAAGACGGACGTACTCTCGCCGACTACAAC 5693 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || ||||| | ||| Sbjct 5692 ATCCAGAAGGAATCAACGCTTCATCTCGTG 5663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428535766700340