Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007458.1 Length=37253 Score E Sequences producing significant alignments: (Bits) Value seq115326 452 9e-123 seq158858 156 1e-33 >seq115326 Length=14004 Score = 452 bits (500), Expect = 9e-123 Identities = 361/433 (83%), Gaps = 4/433 (1%) Strand=Plus/Plus Query 31992 CTAGCTTTCTTATTATATGTAAAAAGTCATATGTTTTTTATCTTCTTTATAGTACTCTAA 32051 |||||||| |||| | ||||||||||||||| ||||||||||||||||| || | ||| Sbjct 368 CTAGCTTTTTTATCA---GTAAAAAGTCATATGCTTTTTATCTTCTTTATAATATTGTAA 424 Query 32052 CCGGTTTTGCAAAGTGCCAGTGTGGAACTCAAACTTATGGCCATCTGGATCTGTAAAGTA 32111 || | ||| ||||| ||||| || ||||||||||| || ||||| ||||||||||| || Sbjct 425 ACGATCTTGTAAAGTACCAGTATGAAACTCAAACTTGTGCCCATCGGGATCTGTAAAATA 484 Query 32112 AAGAGATCTTTGGTCTCTCTCATCTCTTTCTCGGCCAGGTAAAATATTAACATCATTTTG 32171 || ||| | || |||| |||||||||||||| |||||||| |||||||||| |||||| Sbjct 485 AATAGACCGTTTATCTCGGTCATCTCTTTCTCGTCCAGGTAAGATATTAACATGATTTTG 544 Query 32172 AATTAATACTTCTTTTAAATGGTCTAATGCTTCATTAGTTACAGTGAAAGCCATATGTGT 32231 |||||||| |||||||||| || || | | ||| |||||||||||||| |||||||| Sbjct 545 AATTAATATTTCTTTTAAAGAATCAAACTCATTATTTGTTACAGTGAAAGCTATATGTGT 604 Query 32232 ATAAGATTGCTTAATTTCATTTCTTGGTATATCTTCTTCAACATTTAAAGCAATCCATAA 32291 ||||| | || ||||||||||||||||||| |||||| ||||||| |||||||||||| Sbjct 605 GTAAGAGTACTGAATTTCATTTCTTGGTATACTTTCTTCCACATTTAGAGCAATCCATAA 664 Query 32292 TCCATTTAAATCAAAATACGCTAATTTTCTACCTTTTACTAATAATTTTGCTTGAAGTAt 32351 ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| Sbjct 665 ACCATTTAAATCAAAATAAGCTAACTTTCTACCTTTTACTAATAATTTCGCTTGAAGTA- 723 Query 32352 ttttttGATAGAATTCAATAGATTTTTCCAAGTTTGATACAGAAAAACAAATATGGTTAA 32411 | |||||||| || ||||||| || || | ||| || ||||||||||| ||||||| Sbjct 724 TATTTTGATAAAACTCAATAGCCTTCTCTAGATTTATAACTGAAAAACAAATGTGGTTAA 783 Query 32412 TGCCCTGTAGCAT 32424 | | |||| ||| Sbjct 784 TACTTTGTATCAT 796 >seq158858 Length=235449 Score = 156 bits (172), Expect = 1e-33 Identities = 250/359 (70%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 15179 AACCTTTTATTAGGTTCAAATGTTAAATATGAAAAAACAGATTACCTAATCAATCAATAT 15238 ||||| ||||||| || ||| | | | || |||||||||||| || || ||| Sbjct 22245 AACCTATTATTAGAATCCAATATGGACTTCTCAACAACAGATTACCTTATTAAGATGTAT 22186 Query 15239 TCTCTAACTGAAAACTTCTTTGCGGGTGAGGAATATACCTTTGTAATTAAGGGAAGCGTC 15298 | | | || | | || | || | || || || ||||| || || |||| || Sbjct 22185 AGTTTGTCCGAGGATTGGATTACTGGACAAGAGTACACTTTTGTTATCAAAGGAACTGTT 22126 Query 15299 CCACAAGGTCAGAAATTTGGGATTTGGCAGAATGGCGGGTCTAGCAATGTTGGATATGCA 15358 || ||| || |||||||| || ||||| ||||| || || | || || || | || Sbjct 22125 CCTGCAGGACAAAAATTTGGTATATGGCAAAATGGTGGTTCAAATAAAGTAGGGGAAGCC 22066 Query 15359 ACAAGTGTTTATGCTAATGGAATAACGTATGTAACCTTTAAAGCTGTTGCAACTACAAGT 15418 |||| |||| |||||| |||| |||||||| || ||||| | || || |||| | Sbjct 22065 ACAACAACATATGTGAATGGAGTAACTTATGTAACTTTCAAAGCAATAGCTACAACAACT 22006 Query 15419 GGAAATGAAAGAAAGTTAAGTTTATATAACTATCCAAGTAATACTACAAAGGCAATTGTA 15478 || ||||||||||| |||||||||||||||| || ||||| ||| | | |||| Sbjct 22005 GGTAATGAAAGAAAACTAAGTTTATATAACTACCCTCAAAATACCACACTATCCACTGTA 21946 Query 15479 GAATGGGTTGCCTTGTATAAAGGGAATAAGCCACAGGATTGGACGCCAGCGCCTGAAGA 15537 || ||||||||| | || ||||| ||||||||| ||| ||| | || || || ||||| Sbjct 21945 GATTGGGTTGCCCTATACAAAGGAAATAAGCCAATGGACTGGTCTCCTGCTCCGGAAGA 21887 Score = 143 bits (158), Expect = 6e-30 Identities = 193/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 17700 AAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGATGCT 17759 |||||||| ||| | ||||| | | || || || || || ||||| ||||||||||| Sbjct 160030 AAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCG 160089 Query 17760 CCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCATATT 17819 || ||| | || || || | ||||||||| | || | ||| ||||| || || || | Sbjct 160090 CCTGCTAAGAACGAGGTAAATTACATGATCGGAAATACTAACGAGGTTTCATTCCACTTC 160149 Query 17820 GCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCTTGC 17879 ||||||||||| | ||| ||||||||||||||| | || |||||||| ||| ||| Sbjct 160150 GCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGT 160209 Query 17880 GGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCAAAA 17939 || || || |||| || || || |||| || ||| ||||||||||| ||| | Sbjct 160210 GGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTGAAATCTGTTACTCATTA 160269 Query 17940 TCAGGAGGAGATAGATACTATAAAGCTGA 17968 || || || ||||| | |||||||| Sbjct 160270 TCTGGTGGTCCAAGATATGAAAAAGCTGA 160298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118710094179240