Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq54724 91.5 1e-13
seq210337 82.4 6e-11
seq204555 82.4 6e-11
>seq54724
Length=7877
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || |||||||| || | || || |||||||||||| |||| ||| |
Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | |||| || ||| || || || |||||||| |||| || ||
Sbjct 1935 GACACCATCG-ACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | || | ||| || || ||| | || || | || ||| ||||||| || ||
Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
||||| |||||||||||| | || ||||||||
Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTTG 2087
>seq210337
Length=1863
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || |||||||| || || || ||||||||||| || | || |||| |
Sbjct 1040 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAAACCATCACTTTGGAGGTGGAGAGCTCA 981
Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405
||||| ||| | || ||| || || || ||||| || |||| || |||
Sbjct 980 GACACCATTGATAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCACCGGACCAG 921
Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465
|| |||||||| | ||| || || || |||||||||| ||| |||| || || |||
Sbjct 920 CAGAGACTTATCTTTGCCGGTAAGCAGTTAGAAGATGGACGCACCCTGGCAGACTACAAC 861
Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495
|| || || |||||||| | ||| | |||
Sbjct 860 ATCCAGAAGGAGTCTACACTCCATCTTGTG 831
>seq204555
Length=10983
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || || || || || || || || |||||||| || | ||| ||| |
Sbjct 1490 ATGCAGATATTCGTTAAGACCCTTACCGGTAAAACCATAACTTTGGAAGTTGAGAGCTCA 1431
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| ||||| ||| ||| ||||||||||| |||| || ||
Sbjct 1430 GACACGATTG-ACAATGTAAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCGGACCA 1372
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || || || | |||||| |||||| | ||||||| || | || || || ||
Sbjct 1371 GCAGAGGCTAATCTTTGCGGGGAAACAACTCGAAGATGGTCGGACATTAGCGGACTACAA 1312
Query 115465 CATTCAAAAAGAGTCTACT 115483
|||||| |||||||| |||
Sbjct 1311 CATTCAGAAAGAGTCAACT 1293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423958722115360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |