Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq54724 91.5 1e-13 seq210337 82.4 6e-11 seq204555 82.4 6e-11 >seq54724 Length=7877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| || | || || |||||||||||| |||| ||| | Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || ||| || || || |||||||| |||| || || Sbjct 1935 GACACCATCG-ACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | ||| || || ||| | || || | || ||| ||||||| || || Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| |||||||||||| | || |||||||| Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTTG 2087 >seq210337 Length=1863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| || || || ||||||||||| || | || |||| | Sbjct 1040 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAAACCATCACTTTGGAGGTGGAGAGCTCA 981 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| || || || ||||| || |||| || ||| Sbjct 980 GACACCATTGATAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCACCGGACCAG 921 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || |||||||| | ||| || || || |||||||||| ||| |||| || || ||| Sbjct 920 CAGAGACTTATCTTTGCCGGTAAGCAGTTAGAAGATGGACGCACCCTGGCAGACTACAAC 861 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || || |||||||| | ||| | ||| Sbjct 860 ATCCAGAAGGAGTCTACACTCCATCTTGTG 831 >seq204555 Length=10983 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || |||||||| || | ||| ||| | Sbjct 1490 ATGCAGATATTCGTTAAGACCCTTACCGGTAAAACCATAACTTTGGAAGTTGAGAGCTCA 1431 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| ||||| ||| ||| ||||||||||| |||| || || Sbjct 1430 GACACGATTG-ACAATGTAAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCGGACCA 1372 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | |||||| |||||| | ||||||| || | || || || || Sbjct 1371 GCAGAGGCTAATCTTTGCGGGGAAACAACTCGAAGATGGTCGGACATTAGCGGACTACAA 1312 Query 115465 CATTCAAAAAGAGTCTACT 115483 |||||| |||||||| ||| Sbjct 1311 CATTCAGAAAGAGTCAACT 1293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423958722115360