Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_007814.1
Length=37974
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 156 1e-33
>seq158858
Length=235449
Score = 156 bits (172), Expect = 1e-33
Identities = 250/359 (70%), Gaps = 0/359 (0%)
Strand=Plus/Minus
Query 15170 AACCTTTTATTAGGTTCAAATGTTAAATATGAAAAAACAGATTACCTAATCAATCAATAT 15229
||||| ||||||| || ||| | | | || |||||||||||| || || |||
Sbjct 22245 AACCTATTATTAGAATCCAATATGGACTTCTCAACAACAGATTACCTTATTAAGATGTAT 22186
Query 15230 TCTCTAACTGAAAACTTCTTTGCGGGTGAGGAATATACCTTTGTAATTAAGGGAAGCGTC 15289
| | | || | | || | || | || || || ||||| || || |||| ||
Sbjct 22185 AGTTTGTCCGAGGATTGGATTACTGGACAAGAGTACACTTTTGTTATCAAAGGAACTGTT 22126
Query 15290 CCACAAGGTCAGAAATTTGGGATTTGGCAGAATGGCGGGTCTAGCAATGTTGGATATGCA 15349
|| ||| || |||||||| || ||||| ||||| || || | || || || | ||
Sbjct 22125 CCTGCAGGACAAAAATTTGGTATATGGCAAAATGGTGGTTCAAATAAAGTAGGGGAAGCC 22066
Query 15350 ACAAGTGTTTATGCTAATGGAATAACGTATGTAACCTTTAAAGCTGTTGCAACTACAAGT 15409
|||| |||| |||||| |||| |||||||| || ||||| | || || |||| |
Sbjct 22065 ACAACAACATATGTGAATGGAGTAACTTATGTAACTTTCAAAGCAATAGCTACAACAACT 22006
Query 15410 GGAAATGAAAGAAAGTTAAGTTTATATAACTATCCAAGTAATACTACAAAGGCAATTGTA 15469
|| ||||||||||| |||||||||||||||| || ||||| ||| | | ||||
Sbjct 22005 GGTAATGAAAGAAAACTAAGTTTATATAACTACCCTCAAAATACCACACTATCCACTGTA 21946
Query 15470 GAATGGGTTGCCTTGTATAAAGGGAATAAGCCACAGGATTGGACGCCAGCGCCTGAAGA 15528
|| ||||||||| | || ||||| ||||||||| ||| ||| | || || || |||||
Sbjct 21945 GATTGGGTTGCCCTATACAAAGGAAATAAGCCAATGGACTGGTCTCCTGCTCCGGAAGA 21887
Score = 143 bits (158), Expect = 6e-30
Identities = 193/269 (72%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 17691 AAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGATGCT 17750
|||||||| ||| | ||||| | | || || || || || ||||| |||||||||||
Sbjct 160030 AAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCG 160089
Query 17751 CCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCATATT 17810
|| ||| | || || || | ||||||||| | || | ||| ||||| || || || |
Sbjct 160090 CCTGCTAAGAACGAGGTAAATTACATGATCGGAAATACTAACGAGGTTTCATTCCACTTC 160149
Query 17811 GCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCTTGC 17870
||||||||||| | ||| ||||||||||||||| | || |||||||| ||| |||
Sbjct 160150 GCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGT 160209
Query 17871 GGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCAAAA 17930
|| || || |||| || || || |||| || ||| ||||||||||| ||| |
Sbjct 160210 GGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTGAAATCTGTTACTCATTA 160269
Query 17931 TCAGGAGGAGATAGATACTATAAAGCTGA 17959
|| || || ||||| | ||||||||
Sbjct 160270 TCTGGTGGTCCAAGATATGAAAAAGCTGA 160298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 121009972666496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |