Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq210337 98.7 8e-16
seq54724 96.9 3e-15
seq26661 87.8 1e-12
seq78792 82.4 6e-11
>seq210337
Length=1863
Score = 98.7 bits (108), Expect = 8e-16
Identities = 154/218 (71%), Gaps = 12/218 (6%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || |||||||| || ||||||||||| |||| ||| ||||||
Sbjct 829 AGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGT----GCGTCC 884
Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839
|| || || || || ||| | ||||| | ||| |||||| || | ||||||||
Sbjct 885 ATCTTCTAACTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATTCCCTCTTT 944
Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897
||| || || ||| || || | | | ||||| | |||| |||| |||
Sbjct 945 GTCCTGGATCTTGGCT--TTGACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAAGTG 1002
Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||||||||||||| || || |||||||| ||||||||
Sbjct 1003 ATGGTTTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 1040
>seq54724
Length=7877
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | || |||| || || || ||||| || || || ||||||||||||
Sbjct 2101 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCC 2042
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || ||||||| | ||| || || ||| | || | | ||| |||||| |||
Sbjct 2041 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 1982
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || |||||||| || || ||| ||||| | | | | ||||| | |||
Sbjct 1981 ATACCTTCTTTGTCCTGGATCTTGGCT--TTCACGTTGTCGATGGTGTCTGAGCTCTCAA 1924
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||| |||||||| ||||||| || |||||||| ||||||||
Sbjct 1923 CCTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || |||||||| || ||||||||||| |||| || | |||
Sbjct 2314 AGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCC 2255
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | || || || || | || || || ||||||||| ||| | |||||||||||
Sbjct 2254 TCAAGCTGCTTCCCAGCGAAGATGAGACGTTGTTGGTCCGGAGGAATCCCCTCTTTGTCC 2195
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | | ||||| | ||| || | ||| ||||
Sbjct 2194 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCTGAGCTCTCGACCTCAAGGGTAATGG 2137
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||| || |||||||| ||||||||
Sbjct 2136 TTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 2103
>seq26661
Length=2801
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || ||||| || || | ||| ||||| |||||||| || ||||||||||| |||
Sbjct 1628 CCTCCACGAAGCCTGAGGACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 1569
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| | |||| || | ||| || || || | || | | ||| || ||| ||
Sbjct 1568 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGA 1509
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || ||||| || || ||| ||||| | | | | ||||| | ||
Sbjct 1508 ATACCTTCCTTGTCCTGGATCTTGGCT--TTCACGTTGTCAATTGTGTCTGAGCTTTCAA 1451
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| || ||||| || || |||| || |||||||| ||||||||
Sbjct 1450 CTTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1402
>seq78792
Length=14290
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/231 (68%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||||| || | ||| || | ||| ||||| || ||||| || |||||||| |||||
Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||| ||||||||||| || ||| | || | || || |||||| ||
Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || ||||| || || ||| ||||| | | | | ||||| | ||
Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCT--TTCACATTGTCGATTGTGTCCGAAGATTCAA 11492
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937
|| | ||| || || || || || || ||||| || || ||||||||||
Sbjct 11491 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTT 11441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 403768692691720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |