Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq210337 98.7 8e-16 seq54724 96.9 3e-15 seq26661 87.8 1e-12 seq78792 82.4 6e-11 >seq210337 Length=1863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/218 (71%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| || ||||||||||| |||| ||| |||||| Sbjct 829 AGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGT----GCGTCC 884 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 || || || || || ||| | ||||| | ||| |||||| || | |||||||| Sbjct 885 ATCTTCTAACTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATTCCCTCTTT 944 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || ||| || || | | | ||||| | |||| |||| ||| Sbjct 945 GTCCTGGATCTTGGCT--TTGACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAAGTG 1002 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||||||| || || |||||||| |||||||| Sbjct 1003 ATGGTTTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 1040 >seq54724 Length=7877 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || ||||| || || || |||||||||||| Sbjct 2101 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCC 2042 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | ||| || || ||| | || | | ||| |||||| ||| Sbjct 2041 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 1982 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || ||| ||||| | | | | ||||| | ||| Sbjct 1981 ATACCTTCTTTGTCCTGGATCTTGGCT--TTCACGTTGTCGATGGTGTCTGAGCTCTCAA 1924 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| |||||||| ||||||| || |||||||| |||||||| Sbjct 1923 CCTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| |||| || | ||| Sbjct 2314 AGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCC 2255 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || || ||||||||| ||| | ||||||||||| Sbjct 2254 TCAAGCTGCTTCCCAGCGAAGATGAGACGTTGTTGGTCCGGAGGAATCCCCTCTTTGTCC 2195 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | ||| || | ||| |||| Sbjct 2194 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCTGAGCTCTCGACCTCAAGGGTAATGG 2137 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||| || |||||||| |||||||| Sbjct 2136 TTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 2103 >seq26661 Length=2801 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| ||||| |||||||| || ||||||||||| ||| Sbjct 1628 CCTCCACGAAGCCTGAGGACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 1569 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| || | ||| || || || | || | | ||| || ||| || Sbjct 1568 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGA 1509 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| ||||| | | | | ||||| | || Sbjct 1508 ATACCTTCCTTGTCCTGGATCTTGGCT--TTCACGTTGTCAATTGTGTCTGAGCTTTCAA 1451 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || || |||| || |||||||| |||||||| Sbjct 1450 CTTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1402 >seq78792 Length=14290 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | ||| || | ||| ||||| || ||||| || |||||||| ||||| Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| ||||||||||| || ||| | || | || || |||||| || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| ||||| | | | | ||||| | || Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCT--TTCACATTGTCGATTGTGTCCGAAGATTCAA 11492 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937 || | ||| || || || || || || ||||| || || |||||||||| Sbjct 11491 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTT 11441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403768692691720