Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 185 1e-41
seq27195 158 2e-33
seq205226 104 3e-17
seq191921 87.8 2e-12
seq100826 84.2 3e-11
>seq146431
Length=15796
Score = 185 bits (204), Expect = 1e-41
Identities = 406/595 (68%), Gaps = 10/595 (2%)
Strand=Plus/Plus
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
|||||||| |||||||| ||||||| ||| ||||||| || |||||||| || ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773
|| | ||| ||||| || ||||| || |||||||| || || || || | | | || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240
Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGT 32832
||||| || ||||| || || || || | | || || || || | | |
Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC- 4299
Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892
||| ||||| | |||||| | || ||||| |||||||| ||||| || | |
Sbjct 4300 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTG 4359
Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952
| || |||| | | | || || ||||||| | || ||||| | || |||||||
Sbjct 4360 CGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTAT 4419
Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCG 33011
|||| || ||||| || || ||||| || ||||||||||||||||| ||| | || |||
Sbjct 4420 ACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCA-CGCGCTTCG 4478
Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070
| | ||||| |||| ||| ||||| || | |||||| || |||||||||
Sbjct 4479 GAGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGA 4537
Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 33129
|| || || || || | || ||||| || || | ||| || | ||| || || |
Sbjct 4538 TGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTT 4596
Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189
||| ||| |||| |||| ||| |||||||| | ||||| || ||||| || |
Sbjct 4597 CCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGG 4656
Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244
| || || ||||| | |||||| | | || ||||| ||||| ||| |||||
Sbjct 4657 CTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711
>seq27195
Length=13093
Score = 158 bits (174), Expect = 2e-33
Identities = 400/595 (67%), Gaps = 10/595 (2%)
Strand=Plus/Minus
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
|||| || |||||||||||||||| || ||||||| ||||| ||||| || ||
Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773
|| | || ||||| || || || ||||| ||||| || || || || | | | || ||
Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGA 9119
Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGT 32832
||||| || ||||| || ||| || || | | || || | || | | | |
Sbjct 9118 GAAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATC- 9060
Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892
||| ||||| | |||||| | || ||||| || ||||| ||||| || || |
Sbjct 9059 CATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTG 9000
Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952
| ||||||| | | | || || ||||||| | |||||||| | | |||||||
Sbjct 8999 CGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTAT 8940
Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCG 33011
|||| || ||||| || || ||||| || || || ||||||||| ||||| | || ||
Sbjct 8939 ACATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCA 8881
Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070
| | ||||| |||| ||| ||||| || | ||| || || |||||||||
Sbjct 8880 GAGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGA 8822
Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 33129
|| || || || || | || ||||| || || | ||| || | ||| || || |
Sbjct 8821 TGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCT 8763
Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189
||| ||| |||| |||| ||| |||||||| | ||||| || ||||| || |
Sbjct 8762 CCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGG 8703
Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244
| || || ||||| | |||||| | | || ||||| ||||| ||| |||||
Sbjct 8702 CTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648
>seq205226
Length=4968
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285
|||||| ||||| | || | || || | |||| | || | || ||| |||| ||||||
Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565
Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345
||| ||| ||||| || || ||||||| |||||| | || |||||||| ||| ||
Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625
Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405
| ||| || || || || |||| || || || ||| ||||||||||| ||
Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685
Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447
||||| || ||||||||| |||| | ||||| |||||
Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727
>seq191921
Length=6033
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327
||||||||||| ||||||||| || || |||||||| ||| || || |||||| | ||
Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204
Query 63328 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387
||| |||||| || ||| | ||| || || || || ||| || | || ||
Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264
Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 63430
||| | || ||||| |||||||| || || ||||| |||||
Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/118 (77%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 62557 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62616
||| ||||| || ||||| | ||||| ||||||||||| ||||||||||||| | | ||
Sbjct 2808 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTT 2867
Query 62617 AGAGATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673
|| ||| || ||| | |||||| ||||| | ||||||||| || ||||||||
Sbjct 2868 TGACGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATT 2924
>seq100826
Length=54576
Score = 84.2 bits (92), Expect = 3e-11
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
||||| | ||| || | || ||||| ||||||||||||||| | | ||| | || ||
Sbjct 29867 GTTCCTGAATTGAACAGAGTCGGAGATGCGTGAGTAAACCATCTCTGAGACATTAAATGA 29926
Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || || | | || || ||||| | ||| || || || || | || | ||| ||
Sbjct 29927 TAAGTTTCTACCACGGAATCAATATCTTCCTTG-TGTATACCAACAGAAACCCTCATCAA 29985
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGT-TTATTTTCAACAAGTAGGATTTTTCCA 63644
|||||| ||||| |||||||| | ||| | | ||||| || | ||| ||| |||| |
Sbjct 29986 CATGTGTTGAGGCCTTTCAAC-AACTTTTCCTCGGATTTTTAAAAGGTACGATCTTTCAA 30044
Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| || ||||| || | |||| || || || || || || ||
Sbjct 30045 GTGTTTTGAATCCAAAGTAATCGTATTCGAAATCACGATCATAGATTAT 30093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631515447348800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |