Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq146431 185 1e-41 seq27195 158 2e-33 seq205226 104 3e-17 seq191921 87.8 2e-12 seq100826 84.2 3e-11 >seq146431 Length=15796 Score = 185 bits (204), Expect = 1e-41 Identities = 406/595 (68%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||||||| |||||||| ||||||| ||| ||||||| || |||||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 || | ||| ||||| || ||||| || |||||||| || || || || | | | || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGT 32832 ||||| || ||||| || || || || | | || || || || | | | Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC- 4299 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 ||| ||||| | |||||| | || ||||| |||||||| ||||| || | | Sbjct 4300 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTG 4359 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || |||| | | | || || ||||||| | || ||||| | || ||||||| Sbjct 4360 CGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTAT 4419 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCG 33011 |||| || ||||| || || ||||| || ||||||||||||||||| ||| | || ||| Sbjct 4420 ACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCA-CGCGCTTCG 4478 Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | | ||||| |||| ||| ||||| || | |||||| || ||||||||| Sbjct 4479 GAGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGA 4537 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 33129 || || || || || | || ||||| || || | ||| || | ||| || || | Sbjct 4538 TGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTT 4596 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| ||| |||| |||| ||| |||||||| | ||||| || ||||| || | Sbjct 4597 CCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGG 4656 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 | || || ||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 4657 CTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq27195 Length=13093 Score = 158 bits (174), Expect = 2e-33 Identities = 400/595 (67%), Gaps = 10/595 (2%) Strand=Plus/Minus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || |||||||||||||||| || ||||||| ||||| ||||| || || Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 || | || ||||| || || || ||||| ||||| || || || || | | | || || Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGA 9119 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGT 32832 ||||| || ||||| || ||| || || | | || || | || | | | | Sbjct 9118 GAAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATC- 9060 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 ||| ||||| | |||||| | || ||||| || ||||| ||||| || || | Sbjct 9059 CATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTG 9000 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | ||||||| | | | || || ||||||| | |||||||| | | ||||||| Sbjct 8999 CGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTAT 8940 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCG 33011 |||| || ||||| || || ||||| || || || ||||||||| ||||| | || || Sbjct 8939 ACATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCA 8881 Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | | ||||| |||| ||| ||||| || | ||| || || ||||||||| Sbjct 8880 GAGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGA 8822 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 33129 || || || || || | || ||||| || || | ||| || | ||| || || | Sbjct 8821 TGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCT 8763 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| ||| |||| |||| ||| |||||||| | ||||| || ||||| || | Sbjct 8762 CCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGG 8703 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 | || || ||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 8702 CTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq205226 Length=4968 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | |||| | || | || ||| |||| |||||| Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||| ||||| || || ||||||| |||||| | || |||||||| ||| || Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || |||| || || || ||| ||||||||||| || Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || ||||||||| |||| | ||||| ||||| Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 >seq191921 Length=6033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 ||||||||||| ||||||||| || || |||||||| ||| || || |||||| | || Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204 Query 63328 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387 ||| |||||| || ||| | ||| || || || || ||| || | || || Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264 Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 63430 ||| | || ||||| |||||||| || || ||||| ||||| Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 62557 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62616 ||| ||||| || ||||| | ||||| ||||||||||| ||||||||||||| | | || Sbjct 2808 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTT 2867 Query 62617 AGAGATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 || ||| || ||| | |||||| ||||| | ||||||||| || |||||||| Sbjct 2868 TGACGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATT 2924 >seq100826 Length=54576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | ||| || | || ||||| ||||||||||||||| | | ||| | || || Sbjct 29867 GTTCCTGAATTGAACAGAGTCGGAGATGCGTGAGTAAACCATCTCTGAGACATTAAATGA 29926 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || | | || || ||||| | ||| || || || || | || | ||| || Sbjct 29927 TAAGTTTCTACCACGGAATCAATATCTTCCTTG-TGTATACCAACAGAAACCCTCATCAA 29985 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGT-TTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||| ||||| |||||||| | ||| | | ||||| || | ||| ||| |||| | Sbjct 29986 CATGTGTTGAGGCCTTTCAAC-AACTTTTCCTCGGATTTTTAAAAGGTACGATCTTTCAA 30044 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || ||||| || | |||| || || || || || || || Sbjct 30045 GTGTTTTGAATCCAAAGTAATCGTATTCGAAATCACGATCATAGATTAT 30093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631515447348800