Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq200062 96.9 7e-15
seq28706 96.9 7e-15
seq60654 91.5 3e-13
seq254649 87.8 4e-12
seq237759 87.8 4e-12
seq219143 87.8 4e-12
seq218295 87.8 4e-12
seq216755 87.8 4e-12
seq214452 87.8 4e-12
seq179722 87.8 4e-12
seq157222 87.8 4e-12
seq143658 87.8 4e-12
seq143645 87.8 4e-12
seq142873 87.8 4e-12
seq128071 87.8 4e-12
seq114882 87.8 4e-12
seq99723 87.8 4e-12
seq26137 87.8 4e-12
seq22296 87.8 4e-12
seq20076 87.8 4e-12
seq19888 87.8 4e-12
seq19699 87.8 4e-12
seq19889 86.0 1e-11
seq73375 84.2 4e-11
seq7041 84.2 4e-11
>seq200062
Length=1729
Score = 96.9 bits (106), Expect = 7e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 142048 CGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTT 142107
|||| ||| |||| ||||| |||| ||||||| ||||||||||||| ||||| |||||||
Sbjct 1524 CGCACGTCCCTGTAGCGCAGTGGAAAGCGCGTCGGACTTCTAATCCGAAGGTCGCGGGTT 1583
Query 142108 CGACCCCCGCCAGAGACGCCA 142128
||| ||||||||| || ||||
Sbjct 1584 CGATCCCCGCCAGGGATGCCA 1604
>seq28706
Length=5668
Score = 96.9 bits (106), Expect = 7e-15
Identities = 193/286 (67%), Gaps = 0/286 (0%)
Strand=Plus/Minus
Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576
||||||| | |||| || || || | ||||| | |||| | || | || |||||
Sbjct 1762 TGACTTCGTGAACAAAGAACTGATCTTGTTCTCCATGGCTGATCTTCAGAGGTCAATTCC 1703
Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636
| |||| ||||||||||| || ||| | ||||| || || |||||||| |
Sbjct 1702 CTCAATGGTCGATGGCCTCAAACCGGGTCAGAGAAAGATACTTTTCTGTTCATTCAAGAG 1643
Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696
||| | | ||| ||||| || || || ||||||||||| || || || |
Sbjct 1642 AAACTTCACCAAGGAAGCCAAGGTTGCCCAATTCTCTGGTTATGTGTCAGAGCACTCGGC 1583
Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756
|| || ||||| ||||||||||| || |||| | || ||||| ||||| || ||
Sbjct 1582 TTATCACCACGGCGAGCAGAGTCTTGCCAGTACCATCATCGGAATGGCCCAGGATTACGT 1523
Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802
|| || ||||| || ||| |||| | || | ||||| ||||||
Sbjct 1522 TGGTAGCAACAATATCAACCTGCTTCAGCCAATAGGTCAATTTGGT 1477
>seq60654
Length=6606
Score = 91.5 bits (100), Expect = 3e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558
|| ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||
Sbjct 4523 AGTTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 4464
Query 142559 CGAGCCCCAC 142568
||||||||||
Sbjct 4463 CGAGCCCCAC 4454
>seq254649
Length=1080
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 290 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 231
Query 142563 CCCCAC 142568
||||||
Sbjct 230 CCCCAC 225
>seq237759
Length=6634
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6176 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6235
Query 142563 CCCCAC 142568
||||||
Sbjct 6236 CCCCAC 6241
>seq219143
Length=20139
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628
|| |||||| |||| ||||||||||| || ||| | ||||| || || ||
Sbjct 15787 TCAATTCCCTCAATGGTCGATGGCCTCAAACCGGGTCAGAGAAAGATACTTTTCTGTTCA 15846
Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688
|||||| | ||| | | | ||| ||||| | || || ||||||||||| || |||
Sbjct 15847 TTCAAGAGAAACTTCACTAAGGAAGCCAAGGTTTCCCAATTCTCTGGTTATGTGTCAGAA 15906
Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748
|| | || || || || ||||||||||| || |||| | || ||||| |||
Sbjct 15907 CACTCAGCTTATCACCATGGCGAGCAGAGTCTTGCCAGTACCATCATCGGTATGGCCCAG 15966
Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801
|| || || ||||| ||||| || ||| |||| | || ||||| |||||
Sbjct 15967 GATTACGTTGGCAGCAACAATATCAACCTGCTTCAGCCAGGAGGTCAATTTGG 16019
>seq218295
Length=1062
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 308 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 249
Query 142563 CCCCAC 142568
||||||
Sbjct 248 CCCCAC 243
>seq216755
Length=4649
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 326 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 267
Query 142563 CCCCAC 142568
||||||
Sbjct 266 CCCCAC 261
>seq214452
Length=15074
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 10900 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10841
Query 142563 CCCCAC 142568
||||||
Sbjct 10840 CCCCAC 10835
>seq179722
Length=7207
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2732 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2791
Query 142563 CCCCAC 142568
||||||
Sbjct 2792 CCCCAC 2797
>seq157222
Length=12305
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6559 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6618
Query 142563 CCCCAC 142568
||||||
Sbjct 6619 CCCCAC 6624
>seq143658
Length=6152
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2010 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2069
Query 142563 CCCCAC 142568
||||||
Sbjct 2070 CCCCAC 2075
>seq143645
Length=11647
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2533 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2592
Query 142563 CCCCAC 142568
||||||
Sbjct 2593 CCCCAC 2598
>seq142873
Length=17394
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 13439 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13380
Query 142563 CCCCAC 142568
||||||
Sbjct 13379 CCCCAC 13374
>seq128071
Length=9728
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6846 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6787
Query 142563 CCCCAC 142568
||||||
Sbjct 6786 CCCCAC 6781
>seq114882
Length=326
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110
||||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 263 ATGTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGA 204
Query 142111 CCCCCGCCAGAGA 142123
|||| |||| ||
Sbjct 203 TCCCCACCAGGGA 191
>seq99723
Length=10475
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 3612 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3553
Query 142563 CCCCAC 142568
||||||
Sbjct 3552 CCCCAC 3547
>seq26137
Length=25550
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 15932 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15873
Query 142563 CCCCAC 142568
||||||
Sbjct 15872 CCCCAC 15867
>seq22296
Length=26273
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 18813 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18872
Query 142563 CCCCAC 142568
||||||
Sbjct 18873 CCCCAC 18878
>seq20076
Length=3834
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2833 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2774
Query 142563 CCCCAC 142568
||||||
Sbjct 2773 CCCCAC 2768
>seq19888
Length=26149
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6827 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6768
Query 142563 CCCCAC 142568
||||||
Sbjct 6767 CCCCAC 6762
>seq19699
Length=30775
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 18747 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18806
Query 142563 CCCCAC 142568
||||||
Sbjct 18807 CCCCAC 18812
>seq19889
Length=6968
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 1802 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1861
Query 142564 CCCAC 142568
|||||
Sbjct 1862 CCCAC 1866
>seq73375
Length=13234
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 4287 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 4346
Query 142563 CCCCAC 142568
||||||
Sbjct 4347 CCCCAC 4352
>seq7041
Length=1155
Score = 84.2 bits (92), Expect = 4e-11
Identities = 74/91 (81%), Gaps = 5/91 (5%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 980 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 921
Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTG 142593
|||||| | |||| |||| | |||||||
Sbjct 920 CCCCACGTTGGGC----GTCGTC-TCTTTTG 895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1024317631978748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |