Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq200062 96.9 7e-15 seq28706 96.9 7e-15 seq60654 91.5 3e-13 seq254649 87.8 4e-12 seq237759 87.8 4e-12 seq219143 87.8 4e-12 seq218295 87.8 4e-12 seq216755 87.8 4e-12 seq214452 87.8 4e-12 seq179722 87.8 4e-12 seq157222 87.8 4e-12 seq143658 87.8 4e-12 seq143645 87.8 4e-12 seq142873 87.8 4e-12 seq128071 87.8 4e-12 seq114882 87.8 4e-12 seq99723 87.8 4e-12 seq26137 87.8 4e-12 seq22296 87.8 4e-12 seq20076 87.8 4e-12 seq19888 87.8 4e-12 seq19699 87.8 4e-12 seq19889 86.0 1e-11 seq73375 84.2 4e-11 seq7041 84.2 4e-11 >seq200062 Length=1729 Score = 96.9 bits (106), Expect = 7e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTT 142107 |||| ||| |||| ||||| |||| ||||||| ||||||||||||| ||||| ||||||| Sbjct 1524 CGCACGTCCCTGTAGCGCAGTGGAAAGCGCGTCGGACTTCTAATCCGAAGGTCGCGGGTT 1583 Query 142108 CGACCCCCGCCAGAGACGCCA 142128 ||| ||||||||| || |||| Sbjct 1584 CGATCCCCGCCAGGGATGCCA 1604 >seq28706 Length=5668 Score = 96.9 bits (106), Expect = 7e-15 Identities = 193/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||||||| | |||| || || || | ||||| | |||| | || | || ||||| Sbjct 1762 TGACTTCGTGAACAAAGAACTGATCTTGTTCTCCATGGCTGATCTTCAGAGGTCAATTCC 1703 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | |||| ||||||||||| || ||| | ||||| || || |||||||| | Sbjct 1702 CTCAATGGTCGATGGCCTCAAACCGGGTCAGAGAAAGATACTTTTCTGTTCATTCAAGAG 1643 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | | ||| ||||| || || || ||||||||||| || || || | Sbjct 1642 AAACTTCACCAAGGAAGCCAAGGTTGCCCAATTCTCTGGTTATGTGTCAGAGCACTCGGC 1583 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || || ||||| ||||||||||| || |||| | || ||||| ||||| || || Sbjct 1582 TTATCACCACGGCGAGCAGAGTCTTGCCAGTACCATCATCGGAATGGCCCAGGATTACGT 1523 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || || ||||| || ||| |||| | || | ||||| |||||| Sbjct 1522 TGGTAGCAACAATATCAACCTGCTTCAGCCAATAGGTCAATTTGGT 1477 >seq60654 Length=6606 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || ||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 4523 AGTTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 4464 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 4463 CGAGCCCCAC 4454 >seq254649 Length=1080 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 290 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 231 Query 142563 CCCCAC 142568 |||||| Sbjct 230 CCCCAC 225 >seq237759 Length=6634 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6176 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6235 Query 142563 CCCCAC 142568 |||||| Sbjct 6236 CCCCAC 6241 >seq219143 Length=20139 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || |||||| |||| ||||||||||| || ||| | ||||| || || || Sbjct 15787 TCAATTCCCTCAATGGTCGATGGCCTCAAACCGGGTCAGAGAAAGATACTTTTCTGTTCA 15846 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||| | ||| | | | ||| ||||| | || || ||||||||||| || ||| Sbjct 15847 TTCAAGAGAAACTTCACTAAGGAAGCCAAGGTTTCCCAATTCTCTGGTTATGTGTCAGAA 15906 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 || | || || || || ||||||||||| || |||| | || ||||| ||| Sbjct 15907 CACTCAGCTTATCACCATGGCGAGCAGAGTCTTGCCAGTACCATCATCGGTATGGCCCAG 15966 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 || || || ||||| ||||| || ||| |||| | || ||||| ||||| Sbjct 15967 GATTACGTTGGCAGCAACAATATCAACCTGCTTCAGCCAGGAGGTCAATTTGG 16019 >seq218295 Length=1062 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 308 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 249 Query 142563 CCCCAC 142568 |||||| Sbjct 248 CCCCAC 243 >seq216755 Length=4649 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 326 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 267 Query 142563 CCCCAC 142568 |||||| Sbjct 266 CCCCAC 261 >seq214452 Length=15074 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10900 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10841 Query 142563 CCCCAC 142568 |||||| Sbjct 10840 CCCCAC 10835 >seq179722 Length=7207 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2732 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2791 Query 142563 CCCCAC 142568 |||||| Sbjct 2792 CCCCAC 2797 >seq157222 Length=12305 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6559 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6618 Query 142563 CCCCAC 142568 |||||| Sbjct 6619 CCCCAC 6624 >seq143658 Length=6152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2010 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2069 Query 142563 CCCCAC 142568 |||||| Sbjct 2070 CCCCAC 2075 >seq143645 Length=11647 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2533 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2592 Query 142563 CCCCAC 142568 |||||| Sbjct 2593 CCCCAC 2598 >seq142873 Length=17394 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 13439 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13380 Query 142563 CCCCAC 142568 |||||| Sbjct 13379 CCCCAC 13374 >seq128071 Length=9728 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6846 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6787 Query 142563 CCCCAC 142568 |||||| Sbjct 6786 CCCCAC 6781 >seq114882 Length=326 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| Sbjct 263 ATGTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGA 204 Query 142111 CCCCCGCCAGAGA 142123 |||| |||| || Sbjct 203 TCCCCACCAGGGA 191 >seq99723 Length=10475 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3612 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3553 Query 142563 CCCCAC 142568 |||||| Sbjct 3552 CCCCAC 3547 >seq26137 Length=25550 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 15932 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15873 Query 142563 CCCCAC 142568 |||||| Sbjct 15872 CCCCAC 15867 >seq22296 Length=26273 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 18813 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18872 Query 142563 CCCCAC 142568 |||||| Sbjct 18873 CCCCAC 18878 >seq20076 Length=3834 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2833 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2774 Query 142563 CCCCAC 142568 |||||| Sbjct 2773 CCCCAC 2768 >seq19888 Length=26149 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6827 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6768 Query 142563 CCCCAC 142568 |||||| Sbjct 6767 CCCCAC 6762 >seq19699 Length=30775 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 18747 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18806 Query 142563 CCCCAC 142568 |||||| Sbjct 18807 CCCCAC 18812 >seq19889 Length=6968 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1802 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1861 Query 142564 CCCAC 142568 ||||| Sbjct 1862 CCCAC 1866 >seq73375 Length=13234 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 4287 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 4346 Query 142563 CCCCAC 142568 |||||| Sbjct 4347 CCCCAC 4352 >seq7041 Length=1155 Score = 84.2 bits (92), Expect = 4e-11 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 980 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 921 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTG 142593 |||||| | |||| |||| | ||||||| Sbjct 920 CCCCACGTTGGGC----GTCGTC-TCTTTTG 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1024317631978748