Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq210337 111 1e-19 seq265878 98.7 7e-16 seq54724 95.1 9e-15 seq117562 91.5 1e-13 seq214945 84.2 2e-11 seq185166 84.2 2e-11 >seq210337 Length=1863 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || ||||| || |||||| |||| || | | Sbjct 585 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 526 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||| || ||||| || | ||| |||| Sbjct 525 GGACACTATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGGATCCCTCCGGACCA 466 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| ||||| ||||| || || ||| ||| |||| |||||||| Sbjct 465 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTTTGGCGGATTACAA 406 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||| ||||| ||||||||| |||| | ||| | || || ||| Sbjct 405 TATTCAGAAAGAATCGACTCTTCATTTGGTTCTTCGTCTTCGTGGTGGA 357 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || ||||||||||| | || ||| | || Sbjct 812 ATGCAGATTTTCGTGAAGACCCTTACCGGTAAAACCATTACTCTTGAGGTGGAGAGCTCA 753 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| || || || || || ||| | ||| | || Sbjct 752 GACACGATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 693 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||||||||| ||||| || || || || ||| ||| ||||||||||||| Sbjct 692 CAAAGACTTATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGGACTTTGGCCGATTACAAC 633 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || || ||||| | || || ||| | || |||||| Sbjct 632 ATTCAGAAGGAGTCAACCCTTCACCTTGTGTTGCGTCTTCGTGGAGGA 585 >seq265878 Length=14687 Score = 98.7 bits (108), Expect = 7e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | ||||||||| | ||||||||||| |||||||||||| Sbjct 5322 GACAAAGAGGGAATACCACCTGATCAACAGAGATTGATCTTTGCTGGTAAACAACTAGAA 5381 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||| |||| ||||||||||| ||||| || || ||||||||| |||| || Sbjct 5382 GATGGCCGAACATTGGCGGATTACAATATCCAGAAAGAGTCGACTCTTCATTTGGTCTT 5440 >seq54724 Length=7877 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || |||||||||||| | || || | || Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | || || || || ||||| ||| | ||| |||| Sbjct 1935 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCAG 1994 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| || || ||||| || || | |||| ||||||| |||||| Sbjct 1995 CAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 2054 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||||||||| |||| || ||| | || || || Sbjct 2055 ATTCAGAAAGAGTCTACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 2101 >seq117562 Length=2070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || ||||| || |||||| |||| || | | Sbjct 1686 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 1745 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || ||| || || || || | ||| | || Sbjct 1746 GGACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 1805 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||||||||||| || || ||||| |||||| | || | || || ||||| Sbjct 1806 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAAGATGGACGCACCTTAGCAGACTACAA 1865 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||| || || ||||||||| ||||| | ||| | || || || Sbjct 1866 TATTCAGAAAGAGTCGACTCTTCATTTGGTACTTCGTCTTCGTGGTGG 1913 >seq214945 Length=15579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || || ||| | ||||||||||||| |||||||| || ||||| || ||| Sbjct 5621 GAGAAAGAAGGAGTCCCTTCAGACCAACAGAGACTGATCTTTGCCGGTAAACAGCTGGAA 5562 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| |||| |||||||| || || ||||| || |||| || |||| | Sbjct 5561 GATGGTCGTACTTTGGCTGATTACAACATCCAAAAGGAGTCAGCTCTCCACTTGGTTCTC 5502 Query 22047 CGTTTACGAGGAGG 22060 | ||| ||||||| Sbjct 5501 AGGTTAAGAGGAGG 5488 >seq185166 Length=13725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | ||||||||| | ||||||||||| |||||||||||| Sbjct 3658 GACAAAGAGGGAATACCACCTGATCAACAGAGATTGATCTTTGCTGGTAAACAACTAGAA 3717 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||| | || |||||||| || ||||| || || |||||||| |||| || Sbjct 3718 GATGGTCGAACATTAGCGGATTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTCTT 3776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356958444378712