Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq27195 93.3 8e-14 seq146431 84.2 4e-11 >seq27195 Length=13093 Score = 93.3 bits (102), Expect = 8e-14 Identities = 185/268 (69%), Gaps = 16/268 (6%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | || |||||||||||| || | || || Sbjct 8681 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGGACCGCCGAAGAAGTAGATCTA 8740 Query 42360 GC-CAAGGACACGGCCGG--CTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 | |||| |||| || ||||||| ||| | | ||||||| | ||| | Sbjct 8741 TCACAAG---ACGGACGTGACTGGGAGAATCTCAACGACGGAGAACGTCAC----TTCAT 8793 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || || ||||||||||| |||||||| || || ||||| || || | Sbjct 8794 CAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCTAGAGAATCTCGCTTC 8853 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAG 42531 | |||||| ||| || || || ||| ||||| ||| |||||||| |||||||| | Sbjct 8854 TCGATTCATGTCAGATGTACAAGTCTCTGAAGCGCG-TGCTTTCTACGGATTCCAGATCG 8912 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTA 42559 | || ||||| | || |||||| |||| Sbjct 8913 CGATTGAGAATATCCATTCTGAGATGTA 8940 >seq146431 Length=15796 Score = 84.2 bits (92), Expect = 4e-11 Identities = 183/268 (68%), Gaps = 16/268 (6%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| |||||||||||| || | || || Sbjct 4678 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 4619 Query 42360 GC-CAAGGACACGGCCGG--CTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 | |||| |||| || |||||| ||| | | ||||||| | ||| | Sbjct 4618 TCACAAG---ACGGACGTGACTGGGAAAATCTCAACGACGGAGAACGTCAC----TTCAT 4566 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || |||||||||||||| |||||||| || ||| || || || || | Sbjct 4565 CAAACACGTCCTCGCCTTCTTCGCCGCATCTGACGGAATCGTCCTCGAAAATCTCGCTTC 4506 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAG 42531 | |||||| ||| || || || || ||||| ||| |||||||| || || || | Sbjct 4505 TCGATTCATGTCAGATGTACAAGTCTCCGAAGCGCG-TGCATTCTACGGATTTCAAATCG 4447 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTA 42559 | || ||||| | || |||||| |||| Sbjct 4446 CGATTGAGAATATCCATTCTGAGATGTA 4419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941184776553280