Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 93.3 8e-14
seq146431 84.2 4e-11
>seq27195
Length=13093
Score = 93.3 bits (102), Expect = 8e-14
Identities = 185/268 (69%), Gaps = 16/268 (6%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| ||||||||||| || | || |||||||||||| || | || ||
Sbjct 8681 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGGACCGCCGAAGAAGTAGATCTA 8740
Query 42360 GC-CAAGGACACGGCCGG--CTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412
| |||| |||| || ||||||| ||| | | ||||||| | ||| |
Sbjct 8741 TCACAAG---ACGGACGTGACTGGGAGAATCTCAACGACGGAGAACGTCAC----TTCAT 8793
Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472
|||| || | || || ||||||||||| |||||||| || || ||||| || || |
Sbjct 8794 CAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTTCTAGAGAATCTCGCTTC 8853
Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAG 42531
| |||||| ||| || || || ||| ||||| ||| |||||||| |||||||| |
Sbjct 8854 TCGATTCATGTCAGATGTACAAGTCTCTGAAGCGCG-TGCTTTCTACGGATTCCAGATCG 8912
Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTA 42559
| || ||||| | || |||||| ||||
Sbjct 8913 CGATTGAGAATATCCATTCTGAGATGTA 8940
>seq146431
Length=15796
Score = 84.2 bits (92), Expect = 4e-11
Identities = 183/268 (68%), Gaps = 16/268 (6%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| ||||||||||| || | ||| |||||||||||| || | || ||
Sbjct 4678 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 4619
Query 42360 GC-CAAGGACACGGCCGG--CTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412
| |||| |||| || |||||| ||| | | ||||||| | ||| |
Sbjct 4618 TCACAAG---ACGGACGTGACTGGGAAAATCTCAACGACGGAGAACGTCAC----TTCAT 4566
Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472
|||| || | || |||||||||||||| |||||||| || ||| || || || || |
Sbjct 4565 CAAACACGTCCTCGCCTTCTTCGCCGCATCTGACGGAATCGTCCTCGAAAATCTCGCTTC 4506
Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAG 42531
| |||||| ||| || || || || ||||| ||| |||||||| || || || |
Sbjct 4505 TCGATTCATGTCAGATGTACAAGTCTCCGAAGCGCG-TGCATTCTACGGATTTCAAATCG 4447
Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTA 42559
| || ||||| | || |||||| ||||
Sbjct 4446 CGATTGAGAATATCCATTCTGAGATGTA 4419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 941184776553280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |