Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq34509 122 8e-23
seq255492 111 1e-19
seq29830 100 3e-16
seq29837 96.9 3e-15
>seq34509
Length=4973
Score = 122 bits (134), Expect = 8e-23
Identities = 211/303 (70%), Gaps = 4/303 (1%)
Strand=Plus/Minus
Query 20216 TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAA 20275
|| ||||| || || || |||| || || ||||| || || |||| | || ||
Sbjct 2518 TGGATAAAATCACCAGGAACAAGATCACACACGTGAGCGAGTATGCAAGTAAGAAGAGAG 2459
Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335
||| ||||||||||| || || || | |||||||||| | || | |||||||| |||
Sbjct 2458 TAGGACGCAATGTTAAACGGCACACCAAGACCCATGTCTGCTGAACGCTGATACATTTGA 2399
Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395
|| || ||||| ||||| || ||||| || || |||| ||| || || ||||| |||
Sbjct 2398 CATGAGAGCTCCCCGTCTGCCACATAGAACTGTGCAAACATGTGGCATGGAGGAAGTGCC 2339
Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455
|||||| | || | || ||||| || | | || || | | ||||| |||||
Sbjct 2338 ATCAACTTAAGATCAGAAGGATTCCAAGCTGATAATATAATGCGCCGATCGTCAGGATTG 2279
Query 20456 TTTTTTATTAAATCCA-CA-ATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAG 20513
|||||||| || | || || | || | ||| ||||| || || || ||||| ||||
Sbjct 2278 TTTTTTATCTTGTCGATCACATCTGCG--AGTTGATCAAATCCTTGACCAGTATAATCAG 2221
Query 20514 CAT 20516
|||
Sbjct 2220 CAT 2218
>seq255492
Length=11799
Score = 111 bits (122), Expect = 1e-19
Identities = 225/332 (68%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 20187 TTTTGTAGATGTGGGCATCTCCCA--ACGTGTGAATAAACTCCCCGGGTCTAAGACCAGT 20244
||||||| | || ||||| || | || || | |||| || || || |||| ||
Sbjct 6455 TTTTGTACACATGAGCATCCCCAATAACATGGG--TAAAATCACCAGGAACAAGATCACA 6512
Query 20245 AACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAA 20304
|| ||||| || || |||| | || || ||| ||||||||||| || || || |
Sbjct 6513 CACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAG 6572
Query 20305 ACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAA 20364
||||||||| | || | |||||||| ||||| || ||||| || || |||||||| ||
Sbjct 6573 ACCCATGTCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCTACATAGAA 6632
Query 20365 TTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC 20424
|| |||| ||| || || ||||||||||||||| | ||| | || ||||| ||
Sbjct 6633 CTGTGCAAACATGTGGCATGGAGGAAGCGCCATCAACTTAAGGTCAGAAGGATTCCAAGC 6692
Query 20425 ACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAA 20484
| | || || | | ||| | ||||| ||| | || || | | | | |
Sbjct 6693 CGATAATATAATGCGGCGATCATCAGGATTGTTTCTGATCTTGTCGATTACATCTGCGAG 6752
Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516
||| ||||| || || || ||||| |||||||
Sbjct 6753 TTGATCAAATCCTTGACCAGTATAATCAGCAT 6784
>seq29830
Length=9971
Score = 100 bits (110), Expect = 3e-16
Identities = 193/283 (68%), Gaps = 10/283 (4%)
Strand=Plus/Minus
Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298
|||| ||| ||||| || || | || | || || || |||||||||||| || ||
Sbjct 1275 ACCACAAACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 1216
Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358
|| | |||||| || | || | |||||||| ||||| ||||| || || | || ||
Sbjct 1215 GCCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTCGCAAC 1156
Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418
|||||| || | |||| ||| || || ||||| ||||||| | || | || ||
Sbjct 1155 ATAAAACTGTGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGATCAGAAGGATT 1096
Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATT-----TTTTATTAAATCCACA 20473
||| || |||| || || | || ||| | ||||| || | || |||||| |
Sbjct 1095 CCAAGCCGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAATAC--- 1039
Query 20474 ATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516
|| || | | || ||||| || ||||| ||||| |||||||
Sbjct 1038 ATCTA--AGAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 998
>seq29837
Length=4748
Score = 96.9 bits (106), Expect = 3e-15
Identities = 193/282 (68%), Gaps = 8/282 (3%)
Strand=Plus/Plus
Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298
|||| ||| ||||| || || | || | || || || |||||||||||| || ||
Sbjct 3485 ACCACAAACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 3544
Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358
|| | ||||||||| | || | |||||||| || || ||||| || || | || ||
Sbjct 3545 GCCAAGACCCATGTCGGCTGAGCGCTGATACATTTGGCATGAAAGTTCTCCATTCGCAAC 3604
Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418
|||||| || | |||| ||| || || ||||| ||||||| | || | || ||
Sbjct 3605 ATAAAACTGTGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGATCAGAAGGATT 3664
Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAA 20474
||| || |||| || || | || ||| | ||||| || || || | ||| || |
Sbjct 3665 CCAAGCCGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TAC-A 3722
Query 20475 TGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516
| || | | || ||||| || ||||| ||||| |||||||
Sbjct 3723 TCTA--AAAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 3762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 439898460367520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |