Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq34509 122 8e-23 seq255492 111 1e-19 seq29830 100 3e-16 seq29837 96.9 3e-15 >seq34509 Length=4973 Score = 122 bits (134), Expect = 8e-23 Identities = 211/303 (70%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 20216 TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAA 20275 || ||||| || || || |||| || || ||||| || || |||| | || || Sbjct 2518 TGGATAAAATCACCAGGAACAAGATCACACACGTGAGCGAGTATGCAAGTAAGAAGAGAG 2459 Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||| ||||||||||| || || || | |||||||||| | || | |||||||| ||| Sbjct 2458 TAGGACGCAATGTTAAACGGCACACCAAGACCCATGTCTGCTGAACGCTGATACATTTGA 2399 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || ||||| ||||| || ||||| || || |||| ||| || || ||||| ||| Sbjct 2398 CATGAGAGCTCCCCGTCTGCCACATAGAACTGTGCAAACATGTGGCATGGAGGAAGTGCC 2339 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 |||||| | || | || ||||| || | | || || | | ||||| ||||| Sbjct 2338 ATCAACTTAAGATCAGAAGGATTCCAAGCTGATAATATAATGCGCCGATCGTCAGGATTG 2279 Query 20456 TTTTTTATTAAATCCA-CA-ATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAG 20513 |||||||| || | || || | || | ||| ||||| || || || ||||| |||| Sbjct 2278 TTTTTTATCTTGTCGATCACATCTGCG--AGTTGATCAAATCCTTGACCAGTATAATCAG 2221 Query 20514 CAT 20516 ||| Sbjct 2220 CAT 2218 >seq255492 Length=11799 Score = 111 bits (122), Expect = 1e-19 Identities = 225/332 (68%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 20187 TTTTGTAGATGTGGGCATCTCCCA--ACGTGTGAATAAACTCCCCGGGTCTAAGACCAGT 20244 ||||||| | || ||||| || | || || | |||| || || || |||| || Sbjct 6455 TTTTGTACACATGAGCATCCCCAATAACATGGG--TAAAATCACCAGGAACAAGATCACA 6512 Query 20245 AACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAA 20304 || ||||| || || |||| | || || ||| ||||||||||| || || || | Sbjct 6513 CACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAG 6572 Query 20305 ACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAA 20364 ||||||||| | || | |||||||| ||||| || ||||| || || |||||||| || Sbjct 6573 ACCCATGTCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCTACATAGAA 6632 Query 20365 TTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC 20424 || |||| ||| || || ||||||||||||||| | ||| | || ||||| || Sbjct 6633 CTGTGCAAACATGTGGCATGGAGGAAGCGCCATCAACTTAAGGTCAGAAGGATTCCAAGC 6692 Query 20425 ACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAA 20484 | | || || | | ||| | ||||| ||| | || || | | | | | Sbjct 6693 CGATAATATAATGCGGCGATCATCAGGATTGTTTCTGATCTTGTCGATTACATCTGCGAG 6752 Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 ||| ||||| || || || ||||| ||||||| Sbjct 6753 TTGATCAAATCCTTGACCAGTATAATCAGCAT 6784 >seq29830 Length=9971 Score = 100 bits (110), Expect = 3e-16 Identities = 193/283 (68%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||| ||||| || || | || | || || || |||||||||||| || || Sbjct 1275 ACCACAAACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 1216 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 || | |||||| || | || | |||||||| ||||| ||||| || || | || || Sbjct 1215 GCCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTCGCAAC 1156 Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 |||||| || | |||| ||| || || ||||| ||||||| | || | || || Sbjct 1155 ATAAAACTGTGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGATCAGAAGGATT 1096 Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATT-----TTTTATTAAATCCACA 20473 ||| || |||| || || | || ||| | ||||| || | || |||||| | Sbjct 1095 CCAAGCCGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAATAC--- 1039 Query 20474 ATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || || | | || ||||| || ||||| ||||| ||||||| Sbjct 1038 ATCTA--AGAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 998 >seq29837 Length=4748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 193/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||| ||||| || || | || | || || || |||||||||||| || || Sbjct 3485 ACCACAAACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 3544 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 || | ||||||||| | || | |||||||| || || ||||| || || | || || Sbjct 3545 GCCAAGACCCATGTCGGCTGAGCGCTGATACATTTGGCATGAAAGTTCTCCATTCGCAAC 3604 Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 |||||| || | |||| ||| || || ||||| ||||||| | || | || || Sbjct 3605 ATAAAACTGTGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGATCAGAAGGATT 3664 Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAA 20474 ||| || |||| || || | || ||| | ||||| || || || | ||| || | Sbjct 3665 CCAAGCCGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TAC-A 3722 Query 20475 TGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || | | || ||||| || ||||| ||||| ||||||| Sbjct 3723 TCTA--AAAGCTGATCAAATCCTTGGCCAGTATAATCAGCAT 3762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439898460367520