Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq159694 109 4e-19 seq54724 104 2e-17 seq70799 100 2e-16 seq26661 91.5 1e-13 seq78792 89.7 4e-13 seq153189 82.4 6e-11 >seq159694 Length=3858 Score = 109 bits (120), Expect = 4e-19 Identities = 86/99 (87%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT-GAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| ||||||||||||||| | ||| |||||||||||| Sbjct 1369 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTTGGGTACGATCTAAGGAAC 1428 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 || ||||||| || |||||| |||| ||| || ||||| Sbjct 1429 CACAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 1467 Score = 109 bits (120), Expect = 4e-19 Identities = 86/99 (87%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT-GAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| ||||||||||||||| | ||| |||||||||||| Sbjct 1369 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTTGGGTACGATCTAAGGAAC 1428 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 || ||||||| || |||||| |||| ||| || ||||| Sbjct 1429 CACAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 1467 >seq54724 Length=7877 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || |||| ||||||||| |||||||| ||||||||||| ||||| || Sbjct 1636 AGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCCAAGGTACGG 1577 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| ||||| ||||| || |||| | |||||||||| || | | || Sbjct 1576 CCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCC 1517 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || ||| ||| || ||||| | | |||||| | ||| |||| || Sbjct 1516 TTATCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGGGTG 1457 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATAT 34136 || || |||||||| || |||||||||||||| ||||| | |||||| Sbjct 1456 ATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGTAATAT 1410 >seq70799 Length=497 Score = 100 bits (110), Expect = 2e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATA-TGCGC 37898 ||||||| | || ||||| ||| | || || || |||||||| | || | | ||| Sbjct 302 TGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCA-CGGTTTCCTTCGC 244 Query 37899 ATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTAC 37958 ||||| ||| || || || |||||||| ||||| | | | | || || | | Sbjct 243 ATGTACTGGGCTAAAAAGATACTGGAATGGACTGATACTCCAGATAGAGCACTGGCCGAT 184 Query 37959 GCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGC 38018 ||||||||||||||||| ||||| ||| ||||||| || || || | |||| || || Sbjct 183 GCCATTTATCTCAATGACAAGTATAGCATGGACGGTCGCGACCCAAGTGGTTTTGTTGGA 124 Query 38019 TGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGC 38078 ||| ||||||| ||||| || | || ||| | ||| | || | |||| || Sbjct 123 TGTATGTGGTCAATATGTGGTATTCATGATCAGGGGTGGAGAGAAAGAGAAATTTTTGGA 64 Query 38079 AAGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTT 38120 || ||| |||| |||||||| | ||||| || |||||| Sbjct 63 AAAATTAGGTATATGAACTATGAAGGATGCAAGAGAAAGTTT 22 >seq26661 Length=2801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||||| |||||||| ||||| || ||||||||||| ||||| || Sbjct 1163 AGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCCAAGGTACGG 1104 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || ||||| || || | |||||||||| || | | || Sbjct 1103 CCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCC 1044 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| || ||| ||||| | | | |||| | ||| |||| || Sbjct 1043 TTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTG 984 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| || |||||||| ||||| ||||| Sbjct 983 ATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 946 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| || || ||||||||||| |||||||||||||||||| || ||| Sbjct 1628 CCTCCACGAAGCCTGAGGACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 1569 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| |||| || | |||||| ||||| || |||| | |||||||||| Sbjct 1568 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCC 1515 >seq78792 Length=14290 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| | ||||| || | ||||||||| |||||||| ||||||||||| || Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || |||| |||||||| || |||||||| |||| || ||||| ||| || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 34021 ACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATTC 34076 | | || ||||| || || || | | || || | | || | |||||| Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG----TCGATTGTGTCCGAAGATTC 11494 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTT 34129 || | |||||||| || || ||||| |||||||| ||||| ||||||| Sbjct 11493 AACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTT 11441 >seq153189 Length=17048 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||| ||||| ||||| || |||||||||||||||||| || ||||| || Sbjct 14498 AGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGT 14439 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || ||||||||||| ||||| || |||| | |||||||||| Sbjct 14438 CCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCC 14394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395769230796856