Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq31177 91.5 4e-14 seq74400 80.6 8e-11 >seq31177 Length=8182 Score = 91.5 bits (100), Expect = 4e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 42809 CCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGG 42868 ||||| || || | || ||| | |||||||| || || ||||| || | ||| |||||| Sbjct 2374 CCGAACCGAAGCGAGTTCATCAAGGCGACCGGACGGGCTCCCATCGAAAAGATATCGCGG 2433 Query 42869 ACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTG 42928 | ||| || || ||||| ||||| || || ||| | || |||| | || ||||||||| Sbjct 2434 ATGATTCCACCGACACCGGTCGCTGCCCCTTGGTACGGTTCGACGGCTGACGGGTGGTTG 2493 Query 42929 TGACTCTC 42936 |||||||| Sbjct 2494 TGACTCTC 2501 >seq74400 Length=12614 Score = 80.6 bits (88), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 46022 CAAGGGGAGCAGGCCGTCGCCGCGTTCCAGACGTTCCGGGACTCGGCTATCTTCACCACG 46081 ||||| || ||||| | |||| | | ||||| |||| ||| || ||||||| || Sbjct 7253 CAAGGCGAACAGGCATTGTCCGCCTACAAGACGATCCGTGACGTCGCCGTCTTCACGACC 7312 Query 46082 AAGCGGCTCATCGTGCGGGACGCCCAGGGCATGACAGGACGGAAGGTTGAGATCTACTCC 46141 | ||| | ||| | |||||||| || || ||||||| ||||| || ||||||| Sbjct 7313 CACCGGTTAATCATTCGGGACGCACAAGGACTGACAGGGAAAAAGGTCGAAGTCTACTCG 7372 Query 46142 CTCCCATACTCCGCGATCAACATGTGGTCGTCGGAGAACGCGGGC---AAGCTCGACTTC 46198 | || || |||||||||||| ||| |||| ||||| ||| | | | ||| || Sbjct 7373 ATTCCCTATAAGTCGATCAACATGTATTCGACGGAAAACGCCGGCGGGATGTTTGACATC 7432 Query 46199 AACTCGGA 46206 ||||| || Sbjct 7433 AACTCCGA 7440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147775964880872