Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009760.1 Length=218948 Score E Sequences producing significant alignments: (Bits) Value seq45850 104 3e-17 seq10519 104 3e-17 >seq45850 Length=23888 Score = 104 bits (114), Expect = 3e-17 Identities = 191/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 164078 TTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAGC 164137 |||||| || || ||| || |||| |||||||| ||| | ||||||||| | | | Sbjct 14237 TTATTTAACAGCCTCTTTTAAAGCTTTTCCAGCTTTAAATCCAGGTACTTTTCCTCCTGG 14178 Query 164138 AATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAGT 164197 || | |||||||| || ||||| || || || || |||| || | ||| | ||| Sbjct 14177 GATATGCATTTCTTCGCCCGTTTGGGGATTGCGCCCAGTACGTGCAGAACGCTTACGTAC 14118 Query 164198 TTCGAATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTGCTAAAGCGTTTGTG-- 164255 ||| ||||||||||| || ||||||||||| | | ||| | | ||| | ||||| Sbjct 14117 TTCAAATGTACCAAATCCAATTAACTGTAC--GGATTCCTCTTTTTGAAGAGATTGTGTA 14060 Query 164256 ATACCGCCAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTGTT 164315 || | | | || | ||||| | ||||| || ||||||| | | || | | Sbjct 14059 ATTTGATCTAGGATAGCTTGTACAGATGCAGTAGCCTCTTTTTTAGTAAGTGATGTTTTC 14000 Query 164316 TCAGCTACGTGGTTGATTAATTCAGTTTTGTTCATGAT 164353 |||| ||| ||||| |||| ||| ||||| ||||| || Sbjct 13999 TCAGATACTTGGTTAATTAGTTCGGTTTTATTCATTAT 13962 >seq10519 Length=37031 Score = 104 bits (114), Expect = 3e-17 Identities = 193/278 (69%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 164077 ATTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAG 164136 |||| || || || |||||| ||||||| | |||||| || |||||||| |||| | Sbjct 6988 ATTACTTGACAGCATCTTTCAATGCTTTACCTGGTTTGAAAGCAGGTACTTTGCTTGCTG 7047 Query 164137 CAATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAG 164196 ||||| || ||||| || ||||||| || || |||||||| || || ||||| Sbjct 7048 GGATTTCGATATCTTCTTTTGTACGTGGGTTGCGACCTTTACGAGCTGCGCGTTCACGGA 7107 Query 164197 TTTCGAATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTG-CTAAAGCGTTTGTG 164255 |||||| |||||||||| || || || ||||| | || | | || ||| || | | Sbjct 7108 CTTCGAAGTTACCAAAGCCAATCAATTGGACTTTTT---CTCCAGACTGAAGTGTCTCAG 7164 Query 164256 ATACCGC--CAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTG 164313 | || | ||| || || ||| |||| || | || ||||||| | ||| | Sbjct 7165 TAATCGATTCGAATGTTGATTCAACAACTTTCGTCACGTCTTTTTTAGTCAGACCTGATT 7224 Query 164314 TTTCAGCTACGTGGTTGATTAA-TTCAGTTTTGTTCAT 164350 |||| | || || |||| | | ||||||||||||||| Sbjct 7225 TTTCGACAAC-TGCTTGAATGAGTTCAGTTTTGTTCAT 7261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698165666119040