Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_009760.1
Length=218948
Score E
Sequences producing significant alignments: (Bits) Value
seq45850 104 3e-17
seq10519 104 3e-17
>seq45850
Length=23888
Score = 104 bits (114), Expect = 3e-17
Identities = 191/278 (69%), Gaps = 4/278 (1%)
Strand=Plus/Minus
Query 164078 TTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAGC 164137
|||||| || || ||| || |||| |||||||| ||| | ||||||||| | | |
Sbjct 14237 TTATTTAACAGCCTCTTTTAAAGCTTTTCCAGCTTTAAATCCAGGTACTTTTCCTCCTGG 14178
Query 164138 AATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAGT 164197
|| | |||||||| || ||||| || || || || |||| || | ||| | |||
Sbjct 14177 GATATGCATTTCTTCGCCCGTTTGGGGATTGCGCCCAGTACGTGCAGAACGCTTACGTAC 14118
Query 164198 TTCGAATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTGCTAAAGCGTTTGTG-- 164255
||| ||||||||||| || ||||||||||| | | ||| | | ||| | |||||
Sbjct 14117 TTCAAATGTACCAAATCCAATTAACTGTAC--GGATTCCTCTTTTTGAAGAGATTGTGTA 14060
Query 164256 ATACCGCCAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTGTT 164315
|| | | | || | ||||| | ||||| || ||||||| | | || | |
Sbjct 14059 ATTTGATCTAGGATAGCTTGTACAGATGCAGTAGCCTCTTTTTTAGTAAGTGATGTTTTC 14000
Query 164316 TCAGCTACGTGGTTGATTAATTCAGTTTTGTTCATGAT 164353
|||| ||| ||||| |||| ||| ||||| ||||| ||
Sbjct 13999 TCAGATACTTGGTTAATTAGTTCGGTTTTATTCATTAT 13962
>seq10519
Length=37031
Score = 104 bits (114), Expect = 3e-17
Identities = 193/278 (69%), Gaps = 8/278 (3%)
Strand=Plus/Plus
Query 164077 ATTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAG 164136
|||| || || || |||||| ||||||| | |||||| || |||||||| |||| |
Sbjct 6988 ATTACTTGACAGCATCTTTCAATGCTTTACCTGGTTTGAAAGCAGGTACTTTGCTTGCTG 7047
Query 164137 CAATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAG 164196
||||| || ||||| || ||||||| || || |||||||| || || |||||
Sbjct 7048 GGATTTCGATATCTTCTTTTGTACGTGGGTTGCGACCTTTACGAGCTGCGCGTTCACGGA 7107
Query 164197 TTTCGAATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTG-CTAAAGCGTTTGTG 164255
|||||| |||||||||| || || || ||||| | || | | || ||| || | |
Sbjct 7108 CTTCGAAGTTACCAAAGCCAATCAATTGGACTTTTT---CTCCAGACTGAAGTGTCTCAG 7164
Query 164256 ATACCGC--CAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTG 164313
| || | ||| || || ||| |||| || | || ||||||| | ||| |
Sbjct 7165 TAATCGATTCGAATGTTGATTCAACAACTTTCGTCACGTCTTTTTTAGTCAGACCTGATT 7224
Query 164314 TTTCAGCTACGTGGTTGATTAA-TTCAGTTTTGTTCAT 164350
|||| | || || |||| | | |||||||||||||||
Sbjct 7225 TTTCGACAAC-TGCTTGAATGAGTTCAGTTTTGTTCAT 7261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 698165666119040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |