Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_009812.1
Length=42653
Score E
Sequences producing significant alignments: (Bits) Value
seq1367 113 1e-20
>seq1367
Length=293
Score = 113 bits (124), Expect = 1e-20
Identities = 197/283 (70%), Gaps = 4/283 (1%)
Strand=Plus/Minus
Query 39415 GAATTTGAATTCACGCCAGAATTCAAAATCTGGATGGCAACTAACCACAAACCAATTATT 39474
|| || ||||||| |||||||||||| | ||| || ||||||||||||| |||||||||
Sbjct 282 GAGTTCGAATTCAAACCAGAATTCAAACTTTGGCTGTCAACTAACCACAAGCCAATTATT 223
Query 39475 CGAGGGAGAGATGATGGGATTTGGCGTCGATTGCATTTAGTACCTTTCACAGTAAAAATT 39534
|||| | ||||||||| || ||||| ||||| | | || || || || |
Sbjct 222 AGAGGAACAGATGATGGTATCTGGCGGAGATTGATGCTGATTCCATTTACTCATCAAGTA 163
Query 39535 CCTGACGAAAAAGTAGATAAACAGCTAAAATATAAACTCCGCAGTGAATTAACTGGGATA 39594
|| | || | ||||| ||| || | ||| |||||| |||||| || || ||
Sbjct 162 CCAGTGGATCAGGTAGACAAAAGACTCACATACAAACTCGAACGTGAATCAATCGGAATC 103
Query 39595 TTGAACTGGGCTGTAGAAGGCTTCCTTAAATGGCAAAGGGAAGGCTTGGGAATGCCGAAA 39654
| || ||||| || || || ||||||||||| | ||||| || | |||| |
Sbjct 102 CTAAATTGGGCCGTTGATGGAGCACTTAAATGGCAGCGTGAAGGATTAGAGCCGCCGCA- 44
Query 39655 GCAGT-TGAAA-ATGCTAGCTCTGAATATAAATCAGAAATGGA 39695
||| ||||| |||| ||| ||| ||| | ||||||||||
Sbjct 43 -GAGTGTGAAAGATGCAAGCAATGAGTATCGAACAGAAATGGA 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135935258993640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |