Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009812.1 Length=42653 Score E Sequences producing significant alignments: (Bits) Value seq1367 113 1e-20 >seq1367 Length=293 Score = 113 bits (124), Expect = 1e-20 Identities = 197/283 (70%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 39415 GAATTTGAATTCACGCCAGAATTCAAAATCTGGATGGCAACTAACCACAAACCAATTATT 39474 || || ||||||| |||||||||||| | ||| || ||||||||||||| ||||||||| Sbjct 282 GAGTTCGAATTCAAACCAGAATTCAAACTTTGGCTGTCAACTAACCACAAGCCAATTATT 223 Query 39475 CGAGGGAGAGATGATGGGATTTGGCGTCGATTGCATTTAGTACCTTTCACAGTAAAAATT 39534 |||| | ||||||||| || ||||| ||||| | | || || || || | Sbjct 222 AGAGGAACAGATGATGGTATCTGGCGGAGATTGATGCTGATTCCATTTACTCATCAAGTA 163 Query 39535 CCTGACGAAAAAGTAGATAAACAGCTAAAATATAAACTCCGCAGTGAATTAACTGGGATA 39594 || | || | ||||| ||| || | ||| |||||| |||||| || || || Sbjct 162 CCAGTGGATCAGGTAGACAAAAGACTCACATACAAACTCGAACGTGAATCAATCGGAATC 103 Query 39595 TTGAACTGGGCTGTAGAAGGCTTCCTTAAATGGCAAAGGGAAGGCTTGGGAATGCCGAAA 39654 | || ||||| || || || ||||||||||| | ||||| || | |||| | Sbjct 102 CTAAATTGGGCCGTTGATGGAGCACTTAAATGGCAGCGTGAAGGATTAGAGCCGCCGCA- 44 Query 39655 GCAGT-TGAAA-ATGCTAGCTCTGAATATAAATCAGAAATGGA 39695 ||| ||||| |||| ||| ||| ||| | |||||||||| Sbjct 43 -GAGTGTGAAAGATGCAAGCAATGAGTATCGAACAGAAATGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135935258993640