Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq27195 122 2e-22 seq146431 104 5e-17 >seq27195 Length=13093 Score = 122 bits (134), Expect = 2e-22 Identities = 559/872 (64%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || || || || || | || ||||| ||||| ||||| || | ||| | || ||| Sbjct 8660 TTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGG 8719 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGCGAGAAACTCAATG 242992 ||| |||| ||||| ||| | | || |||| ||| |||||| ||||| ||||| | Sbjct 8720 ACCGCCGAAGAAGTAGATCT-ATCACAAGACGGACGT-GACTGG---GAGAATCTCAACG 8774 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| |||||||| |||||||||||| | || | ||| ||||| | || || || || | Sbjct 8775 ACGGAGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCG 8834 Query 243053 TGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 | | || ||||| || | | || ||| || ||| || | || || || Sbjct 8835 TTCTAGAGAATCTCGCTTCTCGA--TTCATGTCAGATGTACAAGTCTCTGAAGCGCGTGC 8892 Query 243111 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTC 243166 || || | | ||| | ||| | ||| |||||||||||| ||| ||| | Sbjct 8893 TTTCTACGGATTCCAGATCGCGATTGA--GAA--TATCCATTCTGAGATGTATAGTCTCC 8948 Query 243167 TTATCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAA 243226 || | || | || |||| | ||||| || | | || ||| ||| ||||||| Sbjct 8949 TTCTGGATACATACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATCGAAA 9008 Query 243227 ACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286 || || || ||| || || |||||||| || ||| | || | | Sbjct 9009 CAATCCCTTGCGTCGCTAAGAAAGCTCAATGGGCTATGACATGGATCGATGGATCTCAGA 9068 Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | || ||||| || ||||||| | | |||||| |||||||| | || ||||| || | Sbjct 9069 CTTTCGCTGAACGAATCGTCGCTTTCGCGTGCGTCGAAGGTATCTTCTTCTCCGGTAGCT 9128 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 |||| | || || ||||| || ||| | |||||||| | | | || |||| Sbjct 9129 TCTGTTCGATTTTCTGGCTCAAAAAACGAGGGCTCATGCCTGGGTTAACTTTCTCAAACG 9188 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGC 243466 |||| ||| || ||||| ||| | ||| | |||| | || || || || | Sbjct 9189 AGTTAATCTCACGAGACGAAGGCTTACACTGCGATTTCGCTTGCCTGATCTACACACTTC 9248 Query 243467 TCCAGAAC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 ||| |||| ||||| | || || || || | || || || || | | Sbjct 9249 TCC-GAACGAAGCTGACGGAGGAGCGAGTGAAGTCGATTGTGTGCGACGCTGTGGAGATC 9307 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | || || | |||||||| |||| ||| | | | || ||||| |||| | Sbjct 9308 GAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTAGGGATGAATCGTGAATTG 9367 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | |||| || || || || || || | |||| |||||||| |||| || Sbjct 9368 ATGAGTGAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTATGGTAAG 9427 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||| | || || |||| | |||||| | || |||||||||||||||||| Sbjct 9428 GTGTACGGTGTGACTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAAGGGAAAACT 9487 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||| || || ||| | || ||||||| || Sbjct 9488 AACTTTTTTGAGAAGAGAGTTGGTGATTACCA 9519 >seq146431 Length=15796 Score = 104 bits (114), Expect = 5e-17 Identities = 562/878 (64%), Gaps = 33/878 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || || || || || | || ||||| ||||| ||||| || | ||| |||| ||| Sbjct 4699 TTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGG 4640 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGCGAGAAACTCAATG 242992 ||| |||| ||||| ||| | | || |||| ||| |||||| || || ||||| | Sbjct 4639 ACCGCCGAAGAAGTAGATCT-ATCACAAGACGGACGT-GACTGG---GAAAATCTCAACG 4585 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| |||||||| |||||||||||| | || | || ||||| | || || || || | Sbjct 4584 ACGGAGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCTGACGGAATCG 4525 Query 243053 TGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 | | |||||||| || | | || ||| || ||| || | || || || Sbjct 4524 TCCTCGAAAATCTCGCTTCTCGA--TTCATGTCAGATGTACAAGTCTCCGAAGCGCGTGC 4467 Query 243111 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTC 243166 ||| || | | |||| ||| | ||| |||||||||||| ||| || || Sbjct 4466 ATTCTACGGATTTCAAATCGCGATTGA--GAA--TATCCATTCTGAGATGTATAGTC-TC 4412 Query 243167 TTA-TCGACGCGCTTATTTC--AGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCG 243223 ||| |||| |||| || |||| | ||||| || | | || ||| ||| ||| Sbjct 4411 TTACTCGA--TACTTACATCAAAGATAACAAAGAGAGAGATCATCTATTCCGCGCAGTCG 4354 Query 243224 AAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTA 243283 ||| ||||| ||| ||| || || |||||||| || ||| | || | Sbjct 4353 AAACAATTCCTTGTGTTGCTAAGAAAGCTCAATGGGCTATGACTTGGATCGATGGATCTC 4294 Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 || | |||||||| || |||| || | | || ||||||||||| | || || || | Sbjct 4293 AAACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCAGGTA 4234 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTCGGTCTGT 243400 | ||||| | || || ||||| || ||| ||| | |||||||| | | | Sbjct 4233 GCTTCTGTTCGATTTTCTGGCT---TAAGAAACGTGGACTCATGCCTGGATTAACCTTCT 4177 Query 243401 CTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATT 243460 ||||||| || ||| || ||||| || | ||| | |||| | | || ||| Sbjct 4176 CTAACGAATTGATCTCACGAGACGAAGGTTTACACTGTGATTTCGCTTGTTTGATCTATA 4117 Query 243461 CAAAGCTCCAGAAC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || |||| ||||| | || || || || | || || || Sbjct 4116 C-TCTCTTACGAACGAAGCTCACGGAGGAGCGAGTGAAGTCGATTGTGTGCGATGCGGTG 4058 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | || | || || | |||||||| |||| ||| | | |||| |||||| | Sbjct 4057 GCGATTGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGT 3998 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 | | | ||| | ||||| || || || || || || | |||| |||||||| || Sbjct 3997 GGATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGCTAC 3938 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 | || ||||| | || || |||| | |||||| | ||||||||||||||| Sbjct 3937 GGTAAGGTGTATGGTGCTTCTAATCCGTTTGATTGGATGGAGTTAATTTCGCTTCAAGGG 3878 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||| || || || ||| | || |||||||||| Sbjct 3877 AAAACTAATTTTTTTGAGAAGAGAGTTGGTGATTATCA 3840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099103894661800