Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_009904.1
Length=142072
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 168 6e-37
seq151743 131 2e-25
seq149378 91.5 1e-13
seq230105 82.4 7e-11
>seq158858
Length=235449
Score = 168 bits (186), Expect = 6e-37
Identities = 519/791 (66%), Gaps = 24/791 (3%)
Strand=Plus/Minus
Query 135847 TTAAGGATGTTCAAATCAGCAATAGCTTCACCAAATG-AGATGCCAAAGCTTAATTCCAA 135905
||||| || || |||||| ||||||| || |||| | | || | ||||||| ||
Sbjct 172372 TTAAG-ATATTTAAATCACCAATAGCAGAACGGAATGTATAACCCTCAT-TTAATTCAAA 172315
Query 135906 CGCAATTGCTCGTAAGCAATCATAGTTTAACTTAATTCTACGGCTAAACTTAACAACACT 135965
|||||| || ||||||| || || |||||||| | | | ||| ||||||
Sbjct 172314 CGCAATCGCACGTAAGCTGTCGTAATTTAACTTTACACGATTTGCAAATGCTACAACATG 172255
Query 135966 GTCAATCTCCCCATAATAAGCTTTGTCTAACTTATCTTGCAAGTAAGTACGAATTTCGTC 136025
| || || |||| ||| || | | || |||| | ||| | ||||||
Sbjct 172254 CTTGATTTCACCATGATACTGTTCAGCAATTTTGTCTTTTAGGTAGATTTCAATTTCAGT 172195
Query 136026 TGCATCAGGGTAGTCGAAACGTAAATGGTAATGGAAACGTCCCGGACGATTAAGCATAAA 136085
||| || || || || || | |||||||||||| || || ||||| | | ||||||
Sbjct 172194 AGCAGTTGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAA 172135
Query 136086 GTCGTTTACACGATTTAAGTTATTAACAGTAAGTGCATAAATACGCTTGCGTTGTGATAA 136145
|| ||||| ||| | | || || |||| ||||| ||||| || || ||| ||
Sbjct 172134 CTCATTTACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTC--TTCTGAGAA 172077
Query 136146 C--CCATCGAATAAGCTCAATAATTTTTCTTGTGATTCACGACCGTCA---CGGTCATTG 136200
||||| ||||| | || ||| ||||| ||| ||| | ||| || ||||
Sbjct 172076 GTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTG 172017
Query 136201 AATACTTTTTCAAATTCATCGAACAAGATAAGAGACTCTTGGTCAATACTGTCAATAAAT 136260
|| | |||||||| ||||| || | || | | ||||||||||| ||||| ||
Sbjct 172016 AACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCTTGGTCAATTTGTTCAATGAAA 171957
Query 136261 TCTGCAATACCCGGATAAGCTTCTGTAATTAAGATAACAGGCATACCCTCTTCAATAGCT 136320
|| ||||| || || | || | ||||| | ||||| || || ||| || || | ||
Sbjct 171956 TCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACCGGGATTTCCTTTTTAACAACT 171897
Query 136321 CGT--TGAGATAAGATTTGAGTAAATAGTGATTTACCAATTCCTTTATCCCCACTTAAAA 136378
| || ||||| |||| ||| | |||||||| |||||||| | ||||| || |
Sbjct 171896 GCTTCTGCAATAAG--TTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTCAAGA 171839
Query 136379 TAACCCCTAAACTACGATTGATTGTTTTAAATGTGTGTAGTACTTTCTCAATTTTAACTA 136438
||| ||||| ||||| | | | ||| | ||| | || |||||| | |||||| ||
Sbjct 171838 TAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTTTCT- 171780
Query 136439 AACGGTCA---CCATAAACTTTAGATTCTTTCAATTTAAAATCGTCTGTAACCGCCAATG 136495
||| | ||||||| || | ||| | ||| ||| | || | | | || |
Sbjct 171779 --GGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAAAG 171722
Query 136496 AGAACCCAGACATTGGGTTGAATCTAACTTTATAAGTTTGCGCAGGCAACTTATCATAAG 136555
|||| || || |||| |||||| ||||| || || || || | || |||||||
Sbjct 171721 AGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCTGGTAGTTTGTCATAAG 171662
Query 136556 TTTTCAGGTCGTTTGCATAAATCTCATAATTACTACCATAATTGATTACTTTCA---TAT 136612
|||| | ||| | | ||||| | |||| |||| || | || || | ||||| |||
Sbjct 171661 TTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCATTTTAT 171602
Query 136613 ATTCTCTCCTT 136623
||| ||||||
Sbjct 171601 ATT-GCTCCTT 171592
>seq151743
Length=442
Score = 131 bits (144), Expect = 2e-25
Identities = 139/175 (79%), Gaps = 9/175 (5%)
Strand=Plus/Plus
Query 1544 TAAGAGACCCTAAACCCTAAAATAGGGCAGTGGGAATC--CCGTGCTAAATCAAG-CGTA 1600
||||||| |||||||| ||| ||||| || || | ||||||||||||| ||||
Sbjct 270 TAAGAGAGACTAAACCCAGCAAT-GGGCAATGTTAACCTACCGTGCTAAATCAGCTCGTA 328
Query 1601 --AGCTTGTAAATGCCTAACGACTAAATTTCTAGGTAGCTAACCAAATGGGGTTAGTGAG 1658
|||| ||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 329 TGAGCT-GTAAATGCCTAACGACTAAATTTCTGGGTAGCTGGTAAAATGGTACTAGTGAG 387
Query 1659 AACTAGATAAGAAAA-CCTCTTAAGA-GGAAGTAAAGCAGAGCAACCTAAACCAA 1711
||| ||||||||||| ||| ||| | ||||||||||||||| ||| ||||||
Sbjct 388 AACCAGATAAGAAAACCCTGGTAACAGGGAAGTAAAGCAGAGGGACCACAACCAA 442
>seq149378
Length=35185
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 8571 AAGATGTAAAATTTGTTAACATGACACCCTCTGCTAATGATATGCAATTTGAAAAATGGC 8630
|||||| || |||||||||||||||| || ||| |||||| |||||||||| |
Sbjct 23144 AAGATGCTAAGTTTGTTAACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTT 23203
Query 8631 TTAACTACTTAATTAATGTTATATCTGCTTTGTATGGAATTGACCCCGCAGAGATAAACT 8690
| |||||| ||||| ||||||| |||| | || |||| | || | ||| || ||||
Sbjct 23204 TGAACTACCTAATTTATGTTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACT 23263
Query 8691 TCCCTAATAATGGTGGTGCAACAGG 8715
| |||||| ||| || || || ||
Sbjct 23264 TTCCTAATCGTGGGGGAGCTACTGG 23288
>seq230105
Length=2871
Score = 82.4 bits (90), Expect = 7e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 136979 AATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCA 137038
||||||| |||||| |||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 2798 AATGGACCCTGCAGGACTCGAACCTGCGACCGGACGGTTATGAGCCGTCAGCTCTAACCA 2857
Query 137039 ACTGAGCTAA 137048
|||||||||
Sbjct 2858 GCTGAGCTAA 2867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452984202908160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |