Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq158858 168 6e-37 seq151743 131 2e-25 seq149378 91.5 1e-13 seq230105 82.4 7e-11 >seq158858 Length=235449 Score = 168 bits (186), Expect = 6e-37 Identities = 519/791 (66%), Gaps = 24/791 (3%) Strand=Plus/Minus Query 135847 TTAAGGATGTTCAAATCAGCAATAGCTTCACCAAATG-AGATGCCAAAGCTTAATTCCAA 135905 ||||| || || |||||| ||||||| || |||| | | || | ||||||| || Sbjct 172372 TTAAG-ATATTTAAATCACCAATAGCAGAACGGAATGTATAACCCTCAT-TTAATTCAAA 172315 Query 135906 CGCAATTGCTCGTAAGCAATCATAGTTTAACTTAATTCTACGGCTAAACTTAACAACACT 135965 |||||| || ||||||| || || |||||||| | | | ||| |||||| Sbjct 172314 CGCAATCGCACGTAAGCTGTCGTAATTTAACTTTACACGATTTGCAAATGCTACAACATG 172255 Query 135966 GTCAATCTCCCCATAATAAGCTTTGTCTAACTTATCTTGCAAGTAAGTACGAATTTCGTC 136025 | || || |||| ||| || | | || |||| | ||| | |||||| Sbjct 172254 CTTGATTTCACCATGATACTGTTCAGCAATTTTGTCTTTTAGGTAGATTTCAATTTCAGT 172195 Query 136026 TGCATCAGGGTAGTCGAAACGTAAATGGTAATGGAAACGTCCCGGACGATTAAGCATAAA 136085 ||| || || || || || | |||||||||||| || || ||||| | | |||||| Sbjct 172194 AGCAGTTGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAA 172135 Query 136086 GTCGTTTACACGATTTAAGTTATTAACAGTAAGTGCATAAATACGCTTGCGTTGTGATAA 136145 || ||||| ||| | | || || |||| ||||| ||||| || || ||| || Sbjct 172134 CTCATTTACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTC--TTCTGAGAA 172077 Query 136146 C--CCATCGAATAAGCTCAATAATTTTTCTTGTGATTCACGACCGTCA---CGGTCATTG 136200 ||||| ||||| | || ||| ||||| ||| ||| | ||| || |||| Sbjct 172076 GTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTG 172017 Query 136201 AATACTTTTTCAAATTCATCGAACAAGATAAGAGACTCTTGGTCAATACTGTCAATAAAT 136260 || | |||||||| ||||| || | || | | ||||||||||| ||||| || Sbjct 172016 AACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCTTGGTCAATTTGTTCAATGAAA 171957 Query 136261 TCTGCAATACCCGGATAAGCTTCTGTAATTAAGATAACAGGCATACCCTCTTCAATAGCT 136320 || ||||| || || | || | ||||| | ||||| || || ||| || || | || Sbjct 171956 TCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACCGGGATTTCCTTTTTAACAACT 171897 Query 136321 CGT--TGAGATAAGATTTGAGTAAATAGTGATTTACCAATTCCTTTATCCCCACTTAAAA 136378 | || ||||| |||| ||| | |||||||| |||||||| | ||||| || | Sbjct 171896 GCTTCTGCAATAAG--TTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTCAAGA 171839 Query 136379 TAACCCCTAAACTACGATTGATTGTTTTAAATGTGTGTAGTACTTTCTCAATTTTAACTA 136438 ||| ||||| ||||| | | | ||| | ||| | || |||||| | |||||| || Sbjct 171838 TAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTTTCT- 171780 Query 136439 AACGGTCA---CCATAAACTTTAGATTCTTTCAATTTAAAATCGTCTGTAACCGCCAATG 136495 ||| | ||||||| || | ||| | ||| ||| | || | | | || | Sbjct 171779 --GGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAAAG 171722 Query 136496 AGAACCCAGACATTGGGTTGAATCTAACTTTATAAGTTTGCGCAGGCAACTTATCATAAG 136555 |||| || || |||| |||||| ||||| || || || || | || ||||||| Sbjct 171721 AGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCTGGTAGTTTGTCATAAG 171662 Query 136556 TTTTCAGGTCGTTTGCATAAATCTCATAATTACTACCATAATTGATTACTTTCA---TAT 136612 |||| | ||| | | ||||| | |||| |||| || | || || | ||||| ||| Sbjct 171661 TTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCATTTTAT 171602 Query 136613 ATTCTCTCCTT 136623 ||| |||||| Sbjct 171601 ATT-GCTCCTT 171592 >seq151743 Length=442 Score = 131 bits (144), Expect = 2e-25 Identities = 139/175 (79%), Gaps = 9/175 (5%) Strand=Plus/Plus Query 1544 TAAGAGACCCTAAACCCTAAAATAGGGCAGTGGGAATC--CCGTGCTAAATCAAG-CGTA 1600 ||||||| |||||||| ||| ||||| || || | ||||||||||||| |||| Sbjct 270 TAAGAGAGACTAAACCCAGCAAT-GGGCAATGTTAACCTACCGTGCTAAATCAGCTCGTA 328 Query 1601 --AGCTTGTAAATGCCTAACGACTAAATTTCTAGGTAGCTAACCAAATGGGGTTAGTGAG 1658 |||| ||||||||||||||||||||||||| ||||||| |||||| ||||||| Sbjct 329 TGAGCT-GTAAATGCCTAACGACTAAATTTCTGGGTAGCTGGTAAAATGGTACTAGTGAG 387 Query 1659 AACTAGATAAGAAAA-CCTCTTAAGA-GGAAGTAAAGCAGAGCAACCTAAACCAA 1711 ||| ||||||||||| ||| ||| | ||||||||||||||| ||| |||||| Sbjct 388 AACCAGATAAGAAAACCCTGGTAACAGGGAAGTAAAGCAGAGGGACCACAACCAA 442 >seq149378 Length=35185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 8571 AAGATGTAAAATTTGTTAACATGACACCCTCTGCTAATGATATGCAATTTGAAAAATGGC 8630 |||||| || |||||||||||||||| || ||| |||||| |||||||||| | Sbjct 23144 AAGATGCTAAGTTTGTTAACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTT 23203 Query 8631 TTAACTACTTAATTAATGTTATATCTGCTTTGTATGGAATTGACCCCGCAGAGATAAACT 8690 | |||||| ||||| ||||||| |||| | || |||| | || | ||| || |||| Sbjct 23204 TGAACTACCTAATTTATGTTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACT 23263 Query 8691 TCCCTAATAATGGTGGTGCAACAGG 8715 | |||||| ||| || || || || Sbjct 23264 TTCCTAATCGTGGGGGAGCTACTGG 23288 >seq230105 Length=2871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136979 AATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCA 137038 ||||||| |||||| |||||||||||||||| ||||||||||||| ||||| |||| Sbjct 2798 AATGGACCCTGCAGGACTCGAACCTGCGACCGGACGGTTATGAGCCGTCAGCTCTAACCA 2857 Query 137039 ACTGAGCTAA 137048 ||||||||| Sbjct 2858 GCTGAGCTAA 2867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452984202908160