Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq249645 425 2e-114 seq244327 361 2e-95 >seq249645 Length=476466 Score = 425 bits (470), Expect = 2e-114 Identities = 736/1058 (70%), Gaps = 25/1058 (2%) Strand=Plus/Plus Query 51901 AGAGCCAATGTTCTTTGGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGG 51960 |||||| ||||||||||||||| ||| ||||| || || ||||||||||| || || Sbjct 268229 AGAGCCGATGTTCTTTGGTCAGCCCGTCAACGTAGCGCGCTATGACCAACAAAAACACCC 268288 Query 51961 CATATTCGAGAAGTTAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGA 52020 || || ||| | || ||||| || || ||||| ||||| ||||| || ||||| || || Sbjct 268289 AATCTTTGAGCAATTGATTGAAAAGCAGTTGTCGTTCTTTTGGCGTCCAGAAGAAGTTGA 268348 Query 52021 CGTTTCCCAGGACCGTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCAC 52080 || || | |||||||| |||| | || ||| | | |||| || ||||| || Sbjct 268349 TGTGTCACGCGACCGTATGGATTTTAGCAACCTATCATCCCACGAGCAGCACATATTTTT 268408 Query 52081 CAGTAATCTTCGTTATCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGT 52140 || || ||| ||||||| || || ||||| || || || ||| | || ||| || Sbjct 268409 GAGCAACCTTAAGTATCAGACCCTACTCGACTCTATCCAAGGTCGTAGTCCAAACGTGGT 268468 Query 52141 TTTGCTTCCAATCGTGAGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTC 52200 | | || | ||| || ||||| | |||||||||||||| || ||||| ||||| Sbjct 268469 ACTATTGCCGCTAGTGTCTATCCCTGAGCTTGAGACGTGGATTGAGACATGGTCGTTCTC 268528 Query 52201 CGAGACTATTCATTCACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAG 52260 ||||| ||||| ||||| ||||| || |||||||||||||| || | || |||| Sbjct 268529 TGAGACCATTCACTCACGCAGCTATACGCATATCATTCGTAATATCGTCAATGATCCAAA 268588 Query 52261 CATTATCTTTGATGAAATCGTAACTAACGAACACATCA-AGGCACGAGCAATTGGCATCT 52319 |||||||||||||| || | ||||| |||||| |||| || || || ||| Sbjct 268589 TATTATCTTTGATGATATTATGCAAAACGAGCACATCTTAGGC-CGTGCCTCTGATATCG 268647 Query 52320 CCCAATATTATGACGAACTCCA--GCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGG 52377 |||| || ||||| || || | ||||||| | || ||| || || | ||| | || Sbjct 268648 CCCAGTACTATGATGAGCTGTATCGCAACTCGCAGCTATATAGC--TTATACGGTGCTGG 268705 Query 52378 GAGCCATGCT------GGTCATGAAATTA--GTC----TGCGTGAGTTGAAGAAGAAGCT 52425 | ||| | || | ||||| | ||| | || | |||| ||| || | Sbjct 268706 CACGCATAATATCAATGGCAAAGAAATCACGGTCGATTTACGCGCACTGAAAAAGCAGAT 268765 Query 52426 GTATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGC 52485 |||| | ||| ||||| | |||| | | ||||| ||||| ||||||||| ||||| Sbjct 268766 GTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGC 268825 Query 52486 TTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTT 52545 |||||| ||||| || || || || || || |||||||| |||||||| || ||| | Sbjct 268826 TTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAGCT 268885 Query 52546 AATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGC 52605 || || || |||||||| || ||||||||||| || ||||| ||||| |||| || ||| Sbjct 268886 CATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTAAACC-TCATGC 268944 Query 52606 -AAGTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATG-C 52663 | || || || || || |||| || ||||| || || || | | ||| | Sbjct 268945 GCAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTTCGATGAAAGTA 269004 Query 52664 CAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAA 52723 ||||| | || | | |||||| | ||||| || || ||||| | ||| |||||||| Sbjct 269005 TTGAAATCTTCCGCA-AAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTATCTGTTCAAA 269063 Query 52724 GATGGCTCTATGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACG 52783 |||||||| |||||||| ||||||| | ||||| ||| |||| | ||||| ||||| Sbjct 269064 GATGGCTCGATGATTGGTCTAAACAAAGACATTCTGTGCCAATATATCGAATACATCACT 269123 Query 52784 AATATTCGTATGCAAGCAGTTGGATTAGATGCTCCATTC---AAAGGTGCAACTAACCCG 52840 || | |||||| |||| || || || || ||||| || | | ||||| Sbjct 269124 AACTTACGTATGGAAGCGGTCGGCTTGCCAGCGGCATTCCCGAACTCAAAATCAAACCCA 269183 Query 52841 ATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACG 52900 ||||| ||||| || | |||||| || || ||| || || || || || || || Sbjct 269184 ATTCCATGGATCAACACGTGGTTGTCGTCTGACAATGTGCAAGTCGCCCCGCAAGAGACC 269243 Query 52901 GAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGA 52938 |||||||| || ||| |||| || || ||||| || || Sbjct 269244 GAGATTAGCTCGTACTTGGTTGGTCAGATTGATTCTGA 269281 >seq244327 Length=1302 Score = 361 bits (400), Expect = 2e-95 Identities = 753/1107 (68%), Gaps = 31/1107 (3%) Strand=Plus/Minus Query 51856 AATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTT 51915 |||| |||| || | ||||| ||| || ||||| ||| || || || ||||| || Sbjct 1225 AATGTCTTATACAATTTTTTCGAAAAAAAA-AATAATCAACTAAAGGAACCTATGTTTTT 1167 Query 51916 TGGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTT 51975 ||| || || || |||| |||||||| || || || || || || || || || Sbjct 1166 TGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATT 1107 Query 51976 AATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCG 52035 |||||| |||||| | || || || ||| |||| ||||| |||| | || | || | Sbjct 1106 AATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAG 1047 Query 52036 TATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTA 52095 || |||| ||| || |||||| | | ||| |||| ||||| |||||| | || Sbjct 1046 AATAGATTTTCAAAATTTACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATA 987 Query 52096 TCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGT 52155 ||| | | | ||||| ||||| ||| | | || |||| | ||| || ||||| | Sbjct 986 TCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTAT 927 Query 52156 GAGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTC 52215 ||||| ||||| || || ||||||||||| |||||||| || || |||||||| || Sbjct 926 TTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCACTC 867 Query 52216 ACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTA-TCTTTGATG 52274 |||||||||||| || || ||| | |||||||||| | | | | | ||| | ||||||| Sbjct 866 ACGTTCTTATACTCATATTATTAGAAATATTGTTA-ATTCTCCATCTTTAATATTTGATG 808 Query 52275 AAATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACG 52334 | || | | || |||| || || | ||||| | || | | ||| ||||||| Sbjct 807 ATATTATTTCCAATAAACATATTAACGATCGAGCTAAAAATATTTGCATATACTATGACG 748 Query 52335 AACTCCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGTCAT- 52393 || | || | ||| | ||||| || ||||| ||||| | ||| |||| | Sbjct 747 AATTAATAAAAATTACTAGTTATTGGCATTTATTCGGTGAAGGTATACATT-TGGTAAAA 689 Query 52394 -GAAA-----------TTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATG 52441 |||| ||| | | || | | || || || | || ||||| | || Sbjct 688 GGAAAAAATATTAACATTACTTTAAGTTTGCTTAAAAAAAAATTATACCTATGCTTAATA 629 Query 52442 TCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTC 52501 | | |||| ||| ||||||||| | || ||||| || ||||| || ||||| || || Sbjct 628 AGTGTTAATGTATTAGAAGCAATTAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTT 569 Query 52502 GCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAA 52561 |||||| | | ||||||||||| ||||| || ||||| | ||||| ||| |||||||| Sbjct 568 GCAGAAAGAGAATTAATGGAAGGTAATGCAAAAATTATAAGATTAATAGCAAGAGATGAA 509 Query 52562 GCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTG-GAAAA--GAT 52618 ||| | ||| | |||||||| || || || |||| ||| | | || ||||| || Sbjct 508 GCATTGCATCTTACAGGAACACAACATATTTTGAATCTTTTAAGAGATGTGAAAAACAAT 449 Query 52619 GACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCA-GAAATTGTTCGA 52677 || ||||||| | ||| || ||||| ||||| |||| ||| | ||| Sbjct 448 GA---AGAAATGTATCAAACATCTATAGAATGTAAAGAAGAA-GCCATGAATATATTCAT 393 Query 52678 AGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGAT 52737 | || || ||||||| || | ||||| | ||||| || ||||||| || ||| | Sbjct 392 ACTAGCAGCAGAACAAGAAAAAAAGTGGGCTAAATATTTATTTCAAGATGGATCAATGCT 333 Query 52738 TGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCA 52797 ||| | || || | || || || |||| | |||||||| || |||||||||||| | Sbjct 332 TGGACTCAATAAAGATATACTTTGTCAATATATCGAATATATTACTAATATTCGTATGTA 273 Query 52798 AGCAGTTGGATT--AGATGCTCCATTCAAAGGTGCAA-CTAACCCGATTCCGTGGATTAA 52854 ||| | || || | |||| | || ||| ||| |||| || ||||| |||||||| Sbjct 272 TGCAATAGGTTTAAAAATGC-CTTTTGAAA--AACAATCTAATCCTATTCCTTGGATTAA 216 Query 52855 TGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTA 52914 | | ||||| | ||| ||| || ||| ||||||||| || || || ||||| || || Sbjct 215 TTCTTGGTTAACTTCAGATTACGTCCAGACTGCTCCACAAGAGACAGAAATTAGCTCATA 156 Query 52915 CCTGGTCGGGCAAATTGACTCCGAAGT 52941 | || || |||||||| || ||||| Sbjct 155 TTTAGTAGGACAAATTGATTCAGAAGT 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168860842551832