Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq248505 118 1e-21 seq251147 111 2e-19 seq146431 107 2e-18 seq229172 87.8 2e-12 seq27195 82.4 9e-11 >seq248505 Length=7796 Score = 118 bits (130), Expect = 1e-21 Identities = 285/423 (67%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 || ||||| | ||| ||||| |||||||| ||||| | || ||| | |||||| Sbjct 4759 ACCGTGATTTGACGGTCAAAACGACCTGGACGGAGTAAAGCCGGGTCCAAGATATCCGCA 4818 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 10891 ||||| || || ||||| | | ||| || ||||| ||| || |||||||||||| Sbjct 4819 CGGTTTGTTGCTGCGATCATGATGATACCT---TCGTTTTCACTGAATCCATCCATCTCA 4875 Query 10892 GTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCA--TTCGCGGGCATACCACCCGCA 10948 |||| ||||| || | ||||||||||| |||||| | ||| | | | ||| || Sbjct 4876 -ACAAGAAGTTGGTTCAATGTTTGTTCGCGCTCATCATGTCCGCCGCC--AAGACCGGCT 4932 Query 10949 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCA 11008 | ||||| ||| || || ||||| ||||||||||| | |||||| || |||| Sbjct 4933 CCACGTTGACGACCAACCGCATCAATCTCATCGATGAAGATGATACATGGGGCGTTTTTC 4992 Query 11009 CGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACA 11068 ||| |||||| | || || || | ||||||||||| |||||||| || || Sbjct 4993 TTCGCATTTTCAAACAAGTCACGTACACGTGATGCACCGACACCGACAAACATCTCAACG 5052 Query 11069 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 11127 || | | | ||| || | || ||| || ||| || |||||| || || ||||| Sbjct 5053 AAGTCAGAACCTGAA-ATCGAGAAGAACGGTACGCCGGCTTCACCAGCTGCTGCACGGGC 5111 Query 11128 GAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGC 11187 || | || || || || || || ||| | || ||| |||| || || | ||| Sbjct 5112 AAGCAATGTTTTACCTGTACCTGGAGGACCTACAAGGAGGACACCTTTAGGAATACGGGC 5171 Query 11188 ACC 11190 ||| Sbjct 5172 ACC 5174 >seq251147 Length=238287 Score = 111 bits (122), Expect = 2e-19 Identities = 253/374 (68%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 |||||| || ||||||||||| | || || | ||||| | || ||||| ||||| Sbjct 146654 ACGATCGAAACGACCTGGGCGTAATAGCGCTTTATCAAGTACGTCTGCACGGTTGGTCGC 146595 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTG 10902 || |||| || | ||| |||||| ||||| || ||||||||| ||| | || Sbjct 146594 AGCAATGATAATAACGCCT---TCGTTACCTTCAAAACCGTCCATCTCAACCAATAACTG 146538 Query 10903 ATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTT 10959 || | ||||| || || |||||||| | | | | | ||| | || || || Sbjct 146537 GTTTAGAGTTTGCTCACGCTCATCATTACCACCGCCTGTTCCA---GAACCACGATGACG 146481 Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 ||| || || ||||| ||||||||||| | ||||| ||| | ||| || ||| Sbjct 146480 ACCAACTGCATCAATCTCATCGATGAAGATAATACAAGGTGCACTTTTCTTCGCCTGTTC 146421 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||| ||||| || || | ||||| ||||| ||||||||||| || |||| | | Sbjct 146420 AAACATATCACGTACACGTGAAGCACCCACACCAACAAACATTTCTACGAAATCAGAACC 146361 Query 11080 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 ||| || | | ||| || || |||| |||||| || ||||||| ||| | || || | Sbjct 146360 TGAA-ATCGAAAAGAACGGTACTTTGGCTTCACCAGCAATGGCTCTGGCCAATAGCGTTT 146302 Query 11139 TCCCCGTCCCAGGT 11152 | || || || ||| Sbjct 146301 TACCAGTACCTGGT 146288 >seq146431 Length=15796 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||| ||||| || ||||| | ||| || |||||| | ||| |||||||| || Sbjct 4142 GTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTTAATCCAGGCATGAGTCC 4201 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | ||||||||||| ||| || ||| ||||||||||| || || ||||| Sbjct 4202 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAGAAGATACCTTCAACACA 4261 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| || | || || |||||||| Sbjct 4262 AGCGAAAGCTACGATTCGTTCAGCAAA 4288 >seq229172 Length=5357 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||||||||||||||| ||||| ||||| ||||| | |||||||| | Sbjct 4802 AAACCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTTCC--A 4859 Query 10936 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | || ||| || | | ||| |||| || || ||||| ||||| |||||||| ||| Sbjct 4860 CCTCCCATACCAGCGCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 4919 Query 10994 CACGGT 10999 || ||| Sbjct 4920 CAAGGT 4925 >seq27195 Length=13093 Score = 82.4 bits (90), Expect = 9e-11 Identities = 178/262 (68%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | || || ||||| | || |||||||| || || || Sbjct 9210 CCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGCATGAGCCCTCGTTTT 9151 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | ||||||||||| ||| || ||| ||||||||||| || || || |||||||| Sbjct 9150 TTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGCGAAA 9091 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || || ||||| || | | || | || | ||| |||| ||||| || Sbjct 9090 GCGACGATTCGTTCAGCGAAAGTCTGAGA---TCCATCGATCCATGTCATAGCCCATTGA 9034 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || || || ||| || |||| || | ||| || ||||| | | ||| | | || Sbjct 9033 GCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGATGATCTCTCTCTTTG 8974 Query 126303 ATGGATCTTTGATGTACTTATC 126324 | |||||||||||| |||| Sbjct 8973 TT--ATCTTTGATGTATGTATC 8954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595358229902240