Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq78640 116 5e-21 seq116136 95.1 2e-14 >seq78640 Length=167548 Score = 116 bits (128), Expect = 5e-21 Identities = 461/712 (65%), Gaps = 19/712 (3%) Strand=Plus/Plus Query 41387 GGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAAGACGTG 41446 || ||||||||| | |||||||| || | ||| |||| |||| | || | | ||| Sbjct 136158 GGTACGCTGGGTACGGGCAACCATTTTGTAGAAGTGTGTTTGGATGAAACGAATCAGGTG 136217 Query 41447 TGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCACTACATC 41506 ||||||||||| ||| || ||||||||||| ||||| |||||| || ||| ||| Sbjct 136218 TGGATCATGCTACATTCAGGCTCGCGCGGTGTAGGCAATGCCATCGGTCGCTACTTTATC 136277 Query 41507 GAGCGTGCGCAGAAGGAG-TGCGGCATGTGGCACAGCAGCCTGCCGCACAACGATCTCGC 41565 ||| || | |||| |||| | |||| | || | |||| |||| || | || Sbjct 136278 GAGTTGGCACGCGAGGACATGCGTAA-GTGGTTTATCAACTTGCCCGACAAGGACTTGGC 136336 Query 41566 GTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACG----TCCTGTCCATGCTGTGGG 41621 | |||| | || | ||| | ||| || | ||| | |||| | |||| || Sbjct 136337 CTACTTCGCCGAAGGGACTGAGCATTTCGATGATTACTGGTTTGCTGT--AGGCTG--GG 136392 Query 41622 CGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAGCGCTGC 41681 ||||| ||||| | || |||| | ||| || | | | ||| |||| || | Sbjct 136393 CGCAGCGTTTCGCCTTTAAAAACCGTGAAATCATGATGGAAAAAGCCATCAAAGCACTAC 136452 Query 41682 GTCGTCATCTGCCGG---CCTTCGA-GCTGACGGAAGAGGCGGTGAACTGCCACCACAAC 41737 ||| | || | | ||||| || | || || || |||||||||| || || ||| Sbjct 136453 GTCAAATTGTGACAAAACCGTTCGATGCAGCCGTAAAAG-CGGTGAACTGTCATCATAAC 136511 Query 41738 TATTGTGAGCAGGAGAACCACTTCGG-GCGCAACGTGTGGGTCACGCGCAAGGGTGCGGT 41796 ||| || | || | |||| ||| | | || || | ||||| || || || ||||| Sbjct 136512 TATGTCGATAAAGAAGAGCACTACGGCGAGGAA-GTATTTGTCACACGTAAAGGCGCGGT 136570 Query 41797 TCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTACAT 41856 ||||| || | | ||| || ||||| || || || |||||| | || || | || Sbjct 136571 ACGTGCTCGCGTTGGCGAATACGGTATCATCCCTGGGTCAATGGGTGCAAAATCCTTTAT 136630 Query 41857 CGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGGACGCCG 41916 ||| || || || || | || | ||||| ||| || || ||||| ||| Sbjct 136631 CGTGCGCGGTAAAGGTAACGAAGAGTCCTTTTGCTCTTGCTCGCATGGCGCAGGTCGCGT 136690 Query 41917 TATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTGCAGCAGACGCA 41976 ||||| || || ||||| || ||| || | | || | | |||||| | Sbjct 136691 GATGTCACGTACTGAGGCGAAAAAATTATTTACGATAGCCGATCAAATCGCGCAGACTGA 136750 Query 41977 GGGTGTTGAATGCC-CGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGTACAAGG 42035 || || ||||||| | |||| | || || | ||||| || || || || |||||| Sbjct 136751 AGGCGTAGAATGCCGCAAAGA-CGCTGAGGTTATTGATGAGATTCCAGCAGCATACAAGA 136809 Query 42036 ACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATAC 42087 |||||||| | |||||| | |||||||| |||| ||||| || ||||| Sbjct 136810 ACATCGATGACGTGATGAACGCGCAAAGCGACTTGGTAGAAGTGGTGCATAC 136861 >seq116136 Length=90299 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 186526 AGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTA 186585 |||||||| |||||| ||||||||||||| |||||| ||| ||||||| ||| |||||| Sbjct 84420 AGATGGTCGGAGTGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCT- 84362 Query 186586 ACCAGACTGCGCTACACTC 186604 |||| ||||||| |||||| Sbjct 84361 ACCAAACTGCGCCACACTC 84343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737416515119200