Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_010811.2
Length=231255
Score E
Sequences producing significant alignments: (Bits) Value
seq78640 116 5e-21
seq116136 95.1 2e-14
>seq78640
Length=167548
Score = 116 bits (128), Expect = 5e-21
Identities = 461/712 (65%), Gaps = 19/712 (3%)
Strand=Plus/Plus
Query 41387 GGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAAGACGTG 41446
|| ||||||||| | |||||||| || | ||| |||| |||| | || | | |||
Sbjct 136158 GGTACGCTGGGTACGGGCAACCATTTTGTAGAAGTGTGTTTGGATGAAACGAATCAGGTG 136217
Query 41447 TGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCACTACATC 41506
||||||||||| ||| || ||||||||||| ||||| |||||| || ||| |||
Sbjct 136218 TGGATCATGCTACATTCAGGCTCGCGCGGTGTAGGCAATGCCATCGGTCGCTACTTTATC 136277
Query 41507 GAGCGTGCGCAGAAGGAG-TGCGGCATGTGGCACAGCAGCCTGCCGCACAACGATCTCGC 41565
||| || | |||| |||| | |||| | || | |||| |||| || | ||
Sbjct 136278 GAGTTGGCACGCGAGGACATGCGTAA-GTGGTTTATCAACTTGCCCGACAAGGACTTGGC 136336
Query 41566 GTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACG----TCCTGTCCATGCTGTGGG 41621
| |||| | || | ||| | ||| || | ||| | |||| | |||| ||
Sbjct 136337 CTACTTCGCCGAAGGGACTGAGCATTTCGATGATTACTGGTTTGCTGT--AGGCTG--GG 136392
Query 41622 CGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAGCGCTGC 41681
||||| ||||| | || |||| | ||| || | | | ||| |||| || |
Sbjct 136393 CGCAGCGTTTCGCCTTTAAAAACCGTGAAATCATGATGGAAAAAGCCATCAAAGCACTAC 136452
Query 41682 GTCGTCATCTGCCGG---CCTTCGA-GCTGACGGAAGAGGCGGTGAACTGCCACCACAAC 41737
||| | || | | ||||| || | || || || |||||||||| || || |||
Sbjct 136453 GTCAAATTGTGACAAAACCGTTCGATGCAGCCGTAAAAG-CGGTGAACTGTCATCATAAC 136511
Query 41738 TATTGTGAGCAGGAGAACCACTTCGG-GCGCAACGTGTGGGTCACGCGCAAGGGTGCGGT 41796
||| || | || | |||| ||| | | || || | ||||| || || || |||||
Sbjct 136512 TATGTCGATAAAGAAGAGCACTACGGCGAGGAA-GTATTTGTCACACGTAAAGGCGCGGT 136570
Query 41797 TCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTACAT 41856
||||| || | | ||| || ||||| || || || |||||| | || || | ||
Sbjct 136571 ACGTGCTCGCGTTGGCGAATACGGTATCATCCCTGGGTCAATGGGTGCAAAATCCTTTAT 136630
Query 41857 CGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGGACGCCG 41916
||| || || || || | || | ||||| ||| || || ||||| |||
Sbjct 136631 CGTGCGCGGTAAAGGTAACGAAGAGTCCTTTTGCTCTTGCTCGCATGGCGCAGGTCGCGT 136690
Query 41917 TATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTGCAGCAGACGCA 41976
||||| || || ||||| || ||| || | | || | | |||||| |
Sbjct 136691 GATGTCACGTACTGAGGCGAAAAAATTATTTACGATAGCCGATCAAATCGCGCAGACTGA 136750
Query 41977 GGGTGTTGAATGCC-CGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGTACAAGG 42035
|| || ||||||| | |||| | || || | ||||| || || || || ||||||
Sbjct 136751 AGGCGTAGAATGCCGCAAAGA-CGCTGAGGTTATTGATGAGATTCCAGCAGCATACAAGA 136809
Query 42036 ACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATAC 42087
|||||||| | |||||| | |||||||| |||| ||||| || |||||
Sbjct 136810 ACATCGATGACGTGATGAACGCGCAAAGCGACTTGGTAGAAGTGGTGCATAC 136861
>seq116136
Length=90299
Score = 95.1 bits (104), Expect = 2e-14
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 186526 AGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTA 186585
|||||||| |||||| ||||||||||||| |||||| ||| ||||||| ||| ||||||
Sbjct 84420 AGATGGTCGGAGTGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCT- 84362
Query 186586 ACCAGACTGCGCTACACTC 186604
|||| ||||||| ||||||
Sbjct 84361 ACCAAACTGCGCCACACTC 84343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 737416515119200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |