Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_011167.1 Length=53104 Score E Sequences producing significant alignments: (Bits) Value seq237334 114 4e-21 seq255890 87.8 6e-13 >seq237334 Length=23019 Score = 114 bits (126), Expect = 4e-21 Identities = 116/147 (79%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 2578 ATTATGTACCTCTATTATATCACAGTCGTTTCTTCTAAGTAAATAAGGAGTGAAAGCCTA 2637 |||| || || |||||||||| | ||||| || ||||||||||||||||| |||| Sbjct 4736 ATTAGCTAACTTTATTATATCATAAAT-TTTCT-CTCGGTAAATAAGGAGTGAAATCCTA 4679 Query 2638 TGTTAGATAAAAATCAATCGAAAGTCGTCCTTCCTTCATGGGTATGGGAGGGCGTGAAAA 2697 | | |||||||||| |||| || ||||| |||| | ||| ||||| || ||| | || Sbjct 4678 TAT-AGATAAAAATTAATCAGAAATCGTCTTTCCGACGTGGATATGGAAGAACGTAAGAA 4620 Query 2698 ACGAAAAAGAAGCGAAATTGAGGGCGA 2724 ||||||||||||| ||||||| ||||| Sbjct 4619 ACGAAAAAGAAGCAAAATTGAAGGCGA 4593 >seq255890 Length=19928 Score = 87.8 bits (96), Expect = 6e-13 Identities = 80/97 (82%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 13436 AAAGAGCAGCTAGCAAAAGCTAACTGCTC-----AGGTAAT-GGAGAAAGATTACCATGT 13489 ||| |||||||||||| |||||||||||| ||| ||| |||||||||| ||||||| Sbjct 1946 AAAAAGCAGCTAGCAATAGCTAACTGCTCATATAAGGGAATCGGAGAAAGATAACCATGT 2005 Query 13490 CATCTATAGTATTGACGGAATATTGAG-TTTTATTCA 13525 || ||| |||| |||||||||| || ||||||||| Sbjct 2006 -GTCCATATTATTAACGGAATATTAAGTTTTTATTCA 2041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169272332600176