Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_011421.1 Length=132562 Score E Sequences producing significant alignments: (Bits) Value seq206067 125 6e-24 >seq206067 Length=18993 Score = 125 bits (138), Expect = 6e-24 Identities = 537/840 (64%), Gaps = 53/840 (6%) Strand=Plus/Plus Query 35781 CGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGCT 35840 || || ||||| || || || | || |||| || || || || || || || || Sbjct 11574 CGGATCGATCTCGTCAAAGAATCGTACTGGGCACTTTCGAACCTGTATATGACGGTTGCG 11633 Query 35841 ACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAGCTCGTGTTTCATTGGA 35900 ||||| ||| || |||||| |||| | | | ||||| | || |||||||| | Sbjct 11634 ACACCGACATTGTCGAATGCCGGTAAATCGTACGGTCAACTCTCGTCATGTTTCATCGAT 11693 Query 35901 ACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGGTGTCT 35960 || || || || || ||| |||||||| || | ||| || | |||| Sbjct 11694 ACGGTCGATGACTCACTACGGGGCATCTATGACTCGAATACGGATGTCGCGACCTTGTCA 11753 Query 35961 AAGTTTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTC--AACAGTTACA 36018 || || || || ||||| || |||||||| ||||||||||| | | | ||| ||| Sbjct 11754 AAAGGCGGCGGCGGAATCGGTGTCTACATGGGAAAAATCCGTTCGCGCGGATCAG--ACA 11811 Query 36019 TCCGTGGTATGAAAGGTAAGTCTCAA--GGTGTTATCCCTTGGATTAAAGGGCTTGAA-A 36075 || || | || ||| || |||| ||||| || ||||||| | ||| ||||| | Sbjct 11812 TCAAAGGATTCAAGGGT--GTATCAAGCGGTGTCATTCCTTGGA-TGAAGCAGTTGAACA 11868 Query 36076 ATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGCAGTTTACCTAG 36135 ||||||| || || || ||||| || |||| |||| | || || ||||| || | Sbjct 11869 ATACAGCGGTCAGCGTTGATCAGCTCGGCATGCGTCAAGGATCAATCGCCGTTTATCTGG 11928 Query 36136 ACATCTGGCATAAGGATGTTATGGAATTCC----TGCAAATTGGTACTAATAACGGGGAT 36191 | |||||||| |||||| | | ||||||| ||| || | | ||||||||||| Sbjct 11929 ATATCTGGCACAAGGATATCCTCGAATTCCTCGATGCGAAGTTG----AATAACGGGGAC 11984 Query 36192 GAGAGACGTAAAG--CACGTGACGTATTCCCAGGCTTATGTGTACCAGACCTTTTCATGG 36249 ||| | || | ||| ||| ||||| ||||| | | | || || | ||||||| Sbjct 11985 GAGCG--GTTGCGGACACATGATTTATTCACAGGCGTCAGCCTGCCGGATCATTTCATGC 12042 Query 36250 AGAAACTACAGCCAAACCCTGAAACAGGTAAGGTTGATCCAGATGCTAAATGGTATCTGT 36309 | || | | ||| || | ||| | |||||| ||| Sbjct 12043 GG-----ACCGTC-------GAAGCACG--AGG-------------CGACTGGTATTTGT 12075 Query 36310 TTGACCCTCATGAAGTTAGAATGGTGATGGGGTATAGCCTTGAAGACTCCTATGACGAGG 36369 |||| || |||||| | | | ||||||||| | || || ||||| || | ||| || Sbjct 12076 TTGATCCACATGAAATCCGGACGGTGATGGGCTTCAGTCTGGAAGATTCGTTTGATGAAA 12135 Query 36370 AAGAGGGAGCAGGTACTTTCCGAAAGAGATACATGGAG--TGTGTGAACAGTCCTCTGCT 36427 ||| || || | ||| | |||| | ||| || ||||| || || | || Sbjct 12136 CGGAGCAAGGCGGCAGCTTC--ACGGAGAAATATGAAGCATGTGTCAATGAACCCCGTCT 12193 Query 36428 ATCACGTACAGAAGTACTAGTAAAAGATGTGGCTAAGGCTTTCATGGTGTCTCTTATGGA 36487 || || |||||| | | ||| | | || || |||| ||| | | || Sbjct 12194 GAGCCGGACGAAAGTACCGGCCATCGATCTCGTCAAACGTTACATGCGGTCACAGCTCGA 12253 Query 36488 AACAGGAATGCCGTTTATGTTCTTCCGTGATGAAGTAAACAGAAAGAACCCTAATAAACA 36547 ||| || | |||| ||||||||||| |||| |||||| | ||||| || ||||| Sbjct 12254 AACCGGCACACCGTACATGTTCTTCCGCGATGCGGTAAACCGCGCCAACCCAAACAAACA 12313 Query 36548 TGCTGGAATGATCTACTGCTCTAATTTATGTACTGAGATCACCCAAAACATGAGTCCTAC 36607 ||| || |||||||||| || || | ||| | || || | |||||||||||||| || Sbjct 12314 TGCGGGCATGATCTACTCGTCGAACCTCTGTTCAGAAATTATGCAAAACATGAGTCCGAC 12373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422692459606484