Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq78792 131 1e-25
seq26661 100 2e-16
seq167623 98.7 7e-16
seq26664 98.7 7e-16
seq91578 91.5 1e-13
seq54724 91.5 1e-13
seq66861 86.0 4e-12
seq46463 86.0 4e-12
seq117562 82.4 5e-11
>seq78792
Length=14290
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||| |||| | |||||||||||| || || || || || |||||||||||| |
Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| |||| ||||||| |||||||| || || | |||||||| || ||||| ||||
Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| || || ||| ||| | || || || || | ||| ||
Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 11490
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| ||| || || || || || || ||||| || || || |||||
Sbjct 11489 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 11443
>seq26661
Length=2801
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||||||||| || || ||||| |||||||| ||| |||| | | |||| || | |||
Sbjct 1377 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCGAGTTG 1318
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| || ||| | ||||| | ||| ||||| |||||||||||||||||| || ||
Sbjct 1317 CTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTT 1258
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| ||| | || || || || | | || || || | |||||| || || || ||
Sbjct 1257 AGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATCGTCTTGCCCGT 1198
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| ||| || || || || ||||||
Sbjct 1197 CAAAGTCTTGACGAAGATCTGCATA 1173
Score = 86.0 bits (94), Expect = 4e-12
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031
|||||| || || || || || |||||||| || || || ||| ||||||| | ||
Sbjct 1605 ATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAAGG-TTCGGCCGTCTTCAAGTT 1547
Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091
| || || ||| | ||||| | ||| || || |||||| ||||||||||| || |
Sbjct 1546 GCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCCTGGATCT 1487
Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151
|| ||| || | || || || || |||| || || || |||||||| || || |
Sbjct 1486 TGGCTTTCACGTTGTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCTTGCCCG 1427
Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177
||| || || ||||| || ||||||
Sbjct 1426 TCAAGGTCTTGACAAAGATCTGCATA 1401
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
|| || || ||||| || || || ||||| |||||||| ||| ||| ||| |||||
Sbjct 1841 AACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGACCGTCT 1782
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| | ||| || || ||| | ||||| | ||| ||||| || || |||||||||||
Sbjct 1781 TCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCCTTGTCC 1722
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||| ||| || | || || || || | || || || | |||||| ||
Sbjct 1721 TGGATTTTTGCTTTCACGTTATCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTC 1662
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || |||| || || ||||| || |||||
Sbjct 1661 TTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630
>seq167623
Length=7090
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || || || || |||||||||||| |||| | | ||||||| | |||
Sbjct 2596 ATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTG 2537
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| || ||| | ||||| ||||| || || ||| |||||||||||||| || ||
Sbjct 2536 TTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 2477
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||| ||| | || || |||||| ||| || || | || || || || || ||
Sbjct 2476 CGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGT 2417
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || || |||||
Sbjct 2416 TAGGGTTTTCACGAAGATCTGCAT 2393
>seq26664
Length=6282
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || || || || |||||||| ||| |||| | | ||||||| | |||
Sbjct 5669 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTG 5728
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| || ||| | ||||| ||||| ||||| ||| |||||||||||||| || ||
Sbjct 5729 TTTTCCCGCGAAGATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 5788
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||| ||| | || || |||||| ||| || || | || || || || || ||
Sbjct 5789 CGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGT 5848
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || || |||||
Sbjct 5849 TAGGGTTTTCACGAAGATCTGCAT 5872
>seq91578
Length=16840
Score = 91.5 bits (100), Expect = 1e-13
Identities = 147/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || || || || |||||||| ||| |||| | | ||||||| | |||
Sbjct 265 ATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTG 324
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| || ||| | ||||| || ||||| || ||| |||||||||||||| || ||
Sbjct 325 TTTTCCGGCGAAAATCAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 384
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTG 15151
|| ||| | || || ||||| | || ||| || || | || || || || || |
Sbjct 385 AGCCTTGACATTGTCGATCGTATC-CGATGATTCAACCTCGAGCGTTATCGTCTTCCCCG 443
Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTT 15180
| || ||||| || || || ||||| |||
Sbjct 444 TTAGGGTTTTCACGAAGATCTGCATCTTT 472
>seq54724
Length=7877
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
|| || || ||||| ||||| ||||| || || ||||| ||| ||| |||| ||||
Sbjct 2086 AACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCCGTCC 2027
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| | ||| || || || | ||||| | ||| ||||| || || ||||| |||||
Sbjct 2026 TCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTCC 1967
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
|| ||| ||| || | || || || || | || || || | ||||||||||
Sbjct 1966 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTT 1907
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| |||| || || ||||| || ||||||
Sbjct 1906 TTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||| || | |||| ||| || ||||| || || || || || ||||||||||| ||
Sbjct 1645 CCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCC 1586
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||| || || || || ||| | ||||| | ||| || || ||
Sbjct 1585 AAGG-TACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 1527
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||| || ||| || || || | || || ||||| | |||| ||
Sbjct 1526 AATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCAC 1467
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || || || || || |||||||| ||||| || |||||
Sbjct 1466 CTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419
>seq66861
Length=20397
Score = 86.0 bits (94), Expect = 4e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| || || || || || |||||||| ||| |||| | | ||||||| | ||||
Sbjct 17462 TGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGT 17403
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | ||||| || || || || ||| |||||||||||||| || ||
Sbjct 17402 TTTCCGGCGAAAATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC 17343
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || |||||| ||| || || | || || || || || ||
Sbjct 17342 GCCTTGACATTGTCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTT 17283
Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180
|| ||||| || || || ||||| |||
Sbjct 17282 AGGGTTTTCACGAAGATCTGCATCTTT 17256
>seq46463
Length=250
Score = 86.0 bits (94), Expect = 4e-12
Identities = 91/118 (77%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
||||| ||||| ||||| ||||| || || ||||| || || ||| || | ||||
Sbjct 131 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA--GATAATGTACGGCCATCTT 188
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083
| |||||||| || ||| | ||||| ||||||||||| ||| ||||||||||||||
Sbjct 189 CCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTC 246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
||| |||||||||||||| ||||| ||| ||| |||| |||| || | |||
Sbjct 1 TGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTC 60
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||| || || || |||||||| || || |||||||| ||||||||||||||
Sbjct 61 TACTTCCAAAGTGATGGTTTTGCCAGTTAGAGTTTTCACAAAAATTTGCAT 111
>seq117562
Length=2070
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| || ||||| || || || ||||||||||| ||| | || ||||||| | ||
Sbjct 1434 ATGGAGTGTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTTCCGTCTTCAAGCTG 1375
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| || ||| | || | | || || || ||||| ||||||||||| || ||
Sbjct 1374 CTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTT 1315
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||| || | || |||||||| |||| || || | ||||||||| || || ||
Sbjct 1314 AGCTTTGACGTTATCAATAGTATCTGAGCTTTCGACTTCGAGGGTAATGGTCTTTCCGGT 1255
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| ||| || || || |||||||||
Sbjct 1254 CAAAGTCTTGACGAAGATTTGCATA 1230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356228030991980
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