Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq78792 131 1e-25 seq26661 100 2e-16 seq167623 98.7 7e-16 seq26664 98.7 7e-16 seq91578 91.5 1e-13 seq54724 91.5 1e-13 seq66861 86.0 4e-12 seq46463 86.0 4e-12 seq117562 82.4 5e-11 >seq78792 Length=14290 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | |||||||||||| || || || || || |||||||||||| | Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| |||||||| || || | |||||||| || ||||| |||| Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| ||| | || || || || | ||| || Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 11490 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| || || || || || || ||||| || || || ||||| Sbjct 11489 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 11443 >seq26661 Length=2801 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || ||||| |||||||| ||| |||| | | |||| || | ||| Sbjct 1377 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCGAGTTG 1318 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| | ||| ||||| |||||||||||||||||| || || Sbjct 1317 CTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTT 1258 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || | | || || || | |||||| || || || || Sbjct 1257 AGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATCGTCTTGCCCGT 1198 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||| || || || || |||||| Sbjct 1197 CAAAGTCTTGACGAAGATCTGCATA 1173 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 |||||| || || || || || |||||||| || || || ||| ||||||| | || Sbjct 1605 ATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAAGG-TTCGGCCGTCTTCAAGTT 1547 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 | || || ||| | ||||| | ||| || || |||||| ||||||||||| || | Sbjct 1546 GCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCCTGGATCT 1487 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || ||| || | || || || || |||| || || || |||||||| || || | Sbjct 1486 TGGCTTTCACGTTGTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCTTGCCCG 1427 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || ||||| || |||||| Sbjct 1426 TCAAGGTCTTGACAAAGATCTGCATA 1401 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| || || || ||||| |||||||| ||| ||| ||| ||||| Sbjct 1841 AACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGACCGTCT 1782 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || || ||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 1781 TCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCCTTGTCC 1722 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| || | || || || || | || || || | |||||| || Sbjct 1721 TGGATTTTTGCTTTCACGTTATCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTC 1662 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| || || ||||| || ||||| Sbjct 1661 TTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630 >seq167623 Length=7090 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||||||| |||| | | ||||||| | ||| Sbjct 2596 ATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTG 2537 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | ||||| ||||| || || ||| |||||||||||||| || || Sbjct 2536 TTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 2477 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || |||||| ||| || || | || || || || || || Sbjct 2476 CGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGT 2417 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 2416 TAGGGTTTTCACGAAGATCTGCAT 2393 >seq26664 Length=6282 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| |||| | | ||||||| | ||| Sbjct 5669 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTG 5728 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | ||||| ||||| ||||| ||| |||||||||||||| || || Sbjct 5729 TTTTCCCGCGAAGATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 5788 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || |||||| ||| || || | || || || || || || Sbjct 5789 CGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGT 5848 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 5849 TAGGGTTTTCACGAAGATCTGCAT 5872 >seq91578 Length=16840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| |||| | | ||||||| | ||| Sbjct 265 ATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTG 324 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | ||||| || ||||| || ||| |||||||||||||| || || Sbjct 325 TTTTCCGGCGAAAATCAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 384 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || ||| | || || ||||| | || ||| || || | || || || || || | Sbjct 385 AGCCTTGACATTGTCGATCGTATC-CGATGATTCAACCTCGAGCGTTATCGTCTTCCCCG 443 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || ||||| || || || ||||| ||| Sbjct 444 TTAGGGTTTTCACGAAGATCTGCATCTTT 472 >seq54724 Length=7877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| ||||| || || ||||| ||| ||| |||| |||| Sbjct 2086 AACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCCGTCC 2027 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || || || | ||||| | ||| ||||| || || ||||| ||||| Sbjct 2026 TCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTCC 1967 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| || | || || || || | || || || | |||||||||| Sbjct 1966 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTT 1907 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| |||| || || ||||| || |||||| Sbjct 1906 TTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | |||| ||| || ||||| || || || || || ||||||||||| || Sbjct 1645 CCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCC 1586 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| || || || || ||| | ||||| | ||| || || || Sbjct 1585 AAGG-TACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 1527 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || ||| || || || | || || ||||| | |||| || Sbjct 1526 AATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCAC 1467 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || || || || || |||||||| ||||| || ||||| Sbjct 1466 CTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419 >seq66861 Length=20397 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||| ||| |||| | | ||||||| | |||| Sbjct 17462 TGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGT 17403 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | ||||| || || || || ||| |||||||||||||| || || Sbjct 17402 TTTCCGGCGAAAATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC 17343 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || |||||| ||| || || | || || || || || || Sbjct 17342 GCCTTGACATTGTCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTT 17283 Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 17282 AGGGTTTTCACGAAGATCTGCATCTTT 17256 >seq46463 Length=250 Score = 86.0 bits (94), Expect = 4e-12 Identities = 91/118 (77%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 ||||| ||||| ||||| ||||| || || ||||| || || ||| || | |||| Sbjct 131 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA--GATAATGTACGGCCATCTT 188 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 | |||||||| || ||| | ||||| ||||||||||| ||| |||||||||||||| Sbjct 189 CCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTC 246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||| |||||||||||||| ||||| ||| ||| |||| |||| || | ||| Sbjct 1 TGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTC 60 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || |||||||| || || |||||||| |||||||||||||| Sbjct 61 TACTTCCAAAGTGATGGTTTTGCCAGTTAGAGTTTTCACAAAAATTTGCAT 111 >seq117562 Length=2070 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || || || ||||||||||| ||| | || ||||||| | || Sbjct 1434 ATGGAGTGTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTTCCGTCTTCAAGCTG 1375 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | || | | || || || ||||| ||||||||||| || || Sbjct 1374 CTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTT 1315 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| || | || |||||||| |||| || || | ||||||||| || || || Sbjct 1314 AGCTTTGACGTTATCAATAGTATCTGAGCTTTCGACTTCGAGGGTAATGGTCTTTCCGGT 1255 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||| || || || ||||||||| Sbjct 1254 CAAAGTCTTGACGAAGATTTGCATA 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356228030991980