Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_012635.1 Length=168394 Score E Sequences producing significant alignments: (Bits) Value seq26767 215 6e-51 seq249645 123 3e-23 seq127984 96.9 4e-15 seq252826 84.2 2e-11 >seq26767 Length=1149 Score = 215 bits (238), Expect = 6e-51 Identities = 322/453 (71%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 140715 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 140774 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 140775 TTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140834 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 140835 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 140894 ||| || || || || | || ||| || || || || ||||| |||||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 140895 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140954 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 140955 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 141014 |||||||| | ||| | |||||||||||||| || |||| ||| | ||||| ||||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 141015 TGA---AGCGGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAAC 141068 || || | ||| ||| ||||| | || || | ||||| | ||||| | ||| Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 386 Query 141069 GCATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGTAATGA 141128 ||||| ||||| || ||||| ||||| | |||| |||||| || || ||||| || Sbjct 387 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 446 Query 141129 AATCTGTCGAGTAGATACCGCTTCATAAAAACG 141161 ||| | ||| || | || | ||||||||| Sbjct 447 AATTTTGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 123 bits (136), Expect = 3e-23 Identities = 273/407 (67%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 140731 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 140790 || || || || ||||||||||| | ||||| ||||| || || ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 140791 ACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140850 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 140851 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 140910 || | ||||| |||||||| ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 140911 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCAGCACGAATCATA 140967 |||||||| || ||||||| |||| ||| ||| ||||| || | Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714 Query 140968 CCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG---AAGCGGAA 141024 || |||| || || || ||||| || | || | ||| || || | || || Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654 Query 141025 GCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGC 141084 || |||||||| | ||| |||||| || || | ||||| || |||||||| Sbjct 264653 GC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGA 264597 Query 141085 CGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGTAATGAAAT 141131 || | ||| ||||| ||| | ||| || || ||||||| ||| || Sbjct 264596 CGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 >seq127984 Length=21361 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 72407 GTCATAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGG 72466 ||||||||||||||||| | | ||||||||||||| ||||||||| ||||||| |||||| Sbjct 19919 GTCATAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGG 19860 Query 72467 TAATACCATTATACGATATCCGCAAA 72492 | ||||| || || | | ||||||| Sbjct 19859 TTTTACCACTAAACTACACCCGCAAA 19834 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 71584 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 71643 |||||| || || ||| ||||||| | |||||| || ||||||||| |||||||||||| Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963 Query 71644 ACTGAGCTAAATCAGC 71659 |||||||||| || || Sbjct 191962 ACTGAGCTAAGTCGGC 191947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536933243891520